CX672120

Overview
NameCX672120
Unique NameCX672120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_PSEST (10 kDa chaperonin OS=Pseudomonas stutzeri GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G V+AVG G + + G  + L++  G+ V++  Y+G++    DG + + +  +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVV 95          

HSP 2 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_PSEU2 (10 kDa chaperonin OS=Pseudomonas syringae pv. syringae (strain B728a) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 33/93 (35.48%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G ++AVG G + + G  + L++  G+ V++  Y+G++    DG + + +  +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVV 95          

HSP 2 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_PSESM (10 kDa chaperonin OS=Pseudomonas syringae pv. tomato GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 33/93 (35.48%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G ++AVG G + + G  + L++  G+ V++  Y+G++    DG + + +  +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVV 95          

HSP 2 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_PSE14 (10 kDa chaperonin OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 33/93 (35.48%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G ++AVG G + + G  + L++  G+ V++  Y+G++    DG + + +  +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVV 95          

HSP 2 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_METPP (10 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            ++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K   + ++ K G +V++ KY+G  ++ +G   L++RE+D+  ++E
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFIALNCKVGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVVE 95          

HSP 2 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV +K  E E  TA G+++ + + EKP  G V+AVGPG  +++G+   L+   G+ V++ KY+G   K  DG   + +R  ++ AV+
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFIALNCKVGDRVLFGKYSGQTVK-VDGDELLVMREEDLFAVV 94          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_COLP3 (10 kDa chaperonin OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELE-FNGANHLIVREDDVVGILE 565
            SI+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK G QVI+S+  G + E  +G   LI+ E D++ I+E
Sbjct:    2 SIRPLHDRVIVKRKKVESKSAGGIVLTGSAAEKSTRGEVIAVGNGRILENGEVRPLDVKVGDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96          

HSP 2 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            ++PL+DRV +K  + E  +AGG++LT ++ EK + G VIAVG G + E G  +PL +  G+ V++S+  G   +  DG   + L  S+++A++
Sbjct:    3 IRPLHDRVIVKRKKVESKSAGGIVLTGSAAEKSTRGEVIAVGNGRILENGEVRPLDVKVGDQVIFSEGYGVKTEKIDGEEVLILSESDILAIV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_WOLPP (10 kDa chaperonin OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            ++  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+G G +     ++ ++VK G +V Y ++AGTE+E +   +++++E D++ +++
Sbjct:    5 NLNVLDDNVL--IKPITEEKQGGIVLPSSAEKKPTKGEVIAIGSGSRNSSGERIALTVKTGDKVFYRQWAGTEVEHDNEKYVVMKESDLLAVIK 96          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_SHESW (10 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +++PL+DRV +K  E E T+AGG++LT ++ EK + G ++AVG G + E G  KPL +  G+ V++++  G   +  DG   + L  +++MAV+
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEILAVGNGRILENGTVKPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAVV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_SHEPC (10 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +++PL+DRV +K  E E T+AGG++LT ++ EK + G ++AVG G + E G  KPL +  G+ V++++  G   +  DG   + L  +++MAV+
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEILAVGNGRILENGTVKPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAVV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_SHEB9 (10 kDa chaperonin OS=Shewanella baltica (strain OS195) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +++PL+DRV +K  E E T+AGG++LT ++ EK + G ++AVG G + E G  KPL +  G+ V++++  G   +  DG   + L  +++MAV+
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEILAVGNGRILENGTVKPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAVV 95          
The following BLAST results are available for this feature:
BLAST of CX672120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_PSEST5.079e-1236.5610 kDa chaperonin OS=Pseudomonas stutzeri GN=groS ... [more]
CH10_PSEU26.634e-1235.4810 kDa chaperonin OS=Pseudomonas syringae pv. syri... [more]
CH10_PSESM6.634e-1235.4810 kDa chaperonin OS=Pseudomonas syringae pv. toma... [more]
CH10_PSE146.634e-1235.4810 kDa chaperonin OS=Pseudomonas syringae pv. phas... [more]
CH10_METPP6.634e-1239.7810 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH10_COLP36.634e-1244.2110 kDa chaperonin OS=Colwellia psychrerythraea (st... [more]
CH10_WOLPP8.664e-1236.1710 kDa chaperonin OS=Wolbachia pipientis subsp. Cu... [more]
CH10_SHESW8.664e-1237.2310 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH10_SHEPC8.664e-1237.2310 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH10_SHEB98.664e-1237.2310 kDa chaperonin OS=Shewanella baltica (strain OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672120 ID=CX672120; Name=CX672120; organism=Citrus sinensis; type=EST; length=890bp
CTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATT
GCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATC
CATTGCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGACT
TCAAGGGCAGTGATGGTACCAACTACATTGCTTTAAGAGCTTCTGAAGTG
ATGGCTGTGCTCTCTTAGTTGTCTGTGTTTACTTGAGCGA
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