CX672120

Overview
NameCX672120
Unique NameCX672120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:15..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_TREPS (10 kDa chaperonin OS=Treponema pallidum subsp. pallidum (strain SS14) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            I PL DRVLVK    E KT  GI +P  AQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  HL+++  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_TREPA (10 kDa chaperonin OS=Treponema pallidum GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            I PL DRVLVK    E KT  GI +P  AQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  HL+++  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_SHEHH (10 kDa chaperonin OS=Shewanella halifaxensis (strain HAW-EB4) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +++PL+DRV +K +E E  +AGG++LT ++ E+ S G V+AVG G + E GN  PL +  G+ V++++  G   +  DG   + L  S++MAV+
Sbjct:    2 NIRPLHDRVIVKRSEVESKSAGGIVLTGSAAEQSSRGEVLAVGNGRILENGNVMPLDVKVGDIVIFNEGYGVKKEKIDGEEVLILSESDLMAVV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_CHRSD (10 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 859
            ++PL+DRV ++  E E+ TAGG++L   ++EKP+ G V+AVG G + E G  +PL +  G+TV++    G + +  DG   + +  S+++AV
Sbjct:    3 IRPLHDRVVVRRVEEEQKTAGGIVLPGNAQEKPTRGEVLAVGNGRILESGEVRPLDVKVGDTVIFKDGFGVEKQKIDGEEVLIMSESDILAV 94          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_CHLTA (10 kDa chaperonin OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +KPL DR+ +K  E   T  GG++L + +K+K     V+A+G G  D++G + P  +  G+ V+  KY+G +    +G  Y+ ++ SEV+AVL
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVLALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELT-VEGEEYVIVQMSEVIAVL 101          

HSP 2 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            IKPLGDR+LVK +       GGI LP  A+ K    EV+A+G GK   K  +L   V+ G  V+  KY+G EL   G  ++IV+  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVLALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_CHLMU (10 kDa chaperonin OS=Chlamydia muridarum GN=groS PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +KPL DR+ +K  E   T  GG++L + +K+K     V+A+G G  D++G + P  +  G+ V+  KY+G +    +G  Y+ ++ SEV+AVL
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVLALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELT-VEGEEYVIVQMSEVIAVL 101          

HSP 2 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            IKPLGDR+LVK +       GGI LP  A+ K    EV+A+G GK   K  +L   V+ G  V+  KY+G EL   G  ++IV+  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVLALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_BUCBP (10 kDa chaperonin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            ++PL+DRV +K  EAE  +AGG++LT ++  K + GTVIAVG G + + GN K L +  G+TV++++  G   +  D    + L  S+++A++
Sbjct:    3 IRPLHDRVIVKRKEAESKSAGGIVLTGSAAGKSTRGTVIAVGNGRILDNGNLKSLDVKVGDTVIFNEGYGAKVEKIDNEELLILTESDILAIV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH101_VIBVY (10 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groS1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 32/94 (34.04%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +++PL+DRV ++  E E  +AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+TV++++  G   +  DG   + +  +++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVQPLDVKVGDTVIFAESYGTKTEKIDGKEVLIMSENDIMAIV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH101_VIBVU (10 kDa chaperonin 1 OS=Vibrio vulnificus GN=groS1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 32/94 (34.04%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            +++PL+DRV ++  E E  +AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+TV++++  G   +  DG   + +  +++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVQPLDVKVGDTVIFAESYGTKTEKIDGKEVLIMSENDIMAIV 95          
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_VEREI (10 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ +    L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVHRDELLVMKEDDLFAVVE 95          

HSP 2 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 31/75 (41.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 805
            +L+PL+DRV +K  E+E TTA G+++ + + EKP  G V+AVGPG  +++G    L++  G+ V++ KY+G   K
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVK 76          
The following BLAST results are available for this feature:
BLAST of CX672120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_TREPS1.478e-1141.3010 kDa chaperonin OS=Treponema pallidum subsp. pal... [more]
CH10_TREPA1.478e-1141.3010 kDa chaperonin OS=Treponema pallidum GN=groS PE... [more]
CH10_SHEHH1.478e-1138.3010 kDa chaperonin OS=Shewanella halifaxensis (stra... [more]
CH10_CHRSD1.478e-1136.9610 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH10_CHLTA1.478e-1135.4810 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_CHLMU1.478e-1135.4810 kDa chaperonin OS=Chlamydia muridarum GN=groS P... [more]
CH10_BUCBP1.478e-1137.6310 kDa chaperonin OS=Buchnera aphidicola subsp. Ba... [more]
CH101_VIBVY1.478e-1134.0410 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH101_VIBVU1.478e-1134.0410 kDa chaperonin 1 OS=Vibrio vulnificus GN=groS1 ... [more]
CH10_VEREI1.930e-1139.3610 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672120 ID=CX672120; Name=CX672120; organism=Citrus sinensis; type=EST; length=890bp
CTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATT
GCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATC
CATTGCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGACT
TCAAGGGCAGTGATGGTACCAACTACATTGCTTTAAGAGCTTCTGAAGTG
ATGGCTGTGCTCTCTTAGTTGTCTGTGTTTACTTGAGCGA
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