CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  H ++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 39/94 (41.49%), Postives = 64/94 (68.09%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = -2

Query:  446 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 748
            A VA   +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     + ++ E D++ I++
Sbjct:    2 AAVALNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103

HSP 2 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+ L   +++A++
Sbjct:    8 VSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102

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BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            ++KPL DRVLVK    EEKT GG+F+P  A+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++ +G  H ++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95

HSP 2 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG + E+G    +++  G+TV++SKYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIK-LDGVEHLVMREDDILAII 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = -2

Query:  155 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMA 436
            +   KPL DRVF+KV+ +EE TAGG+LL + +KEKP +G V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILA 100

HSP 2 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = -2

Query:  458 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVV 748
            A ++   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVVAVG GK     ++  I VK G +V+YSKYAGT+++  G ++ ++ E D++
Sbjct:    2 AAISINVSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDIL 99

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPLGDRV++K   +EEKT  GI +P  A+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  + I++E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93

HSP 2 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL DRV IK    EE T  G+++ + +KEKP  G V+AVGPG + E+G R  L +  G+ V+YSKYAG + K  DG  Y+ L+  +++AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPLGDRV++K   +EEKT  GI +P  A+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  + I++E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93

HSP 2 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL DRV IK    EE T  G+++ + +KEKP  G V+AVGPG + E+G R  L +  G+ V+YSKYAG + K  DG  Y+ L+  +++AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_DESDG (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEV+AVG GKT    K + ++VK G  V+++KYAGTE++ +G +H ++REDD++ I++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVKLDGVDHLVMREDDILAIIQ 95

HSP 2 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPLNDRV +K  E+EE TAGGL + + +KEKPS G VIAVGPG   ++G    +++  G+ V+++KYAG + K  DG +++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVK-LDGVDHLVMREDDILAII 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   +++  VK G +VI+SKYAGTE++ +G  + ++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV +KV ++EE T GG++L   +KEKP  G V+AVGPG    +G R    +  G+ V++SKYAG + K  DG  Y+ LR  +++A++
Sbjct:    4 KPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQY-IDGKRVEPEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = -2

Query:  446 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 748
            A V    +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     + ++ E D++ I++
Sbjct:    2 AAVTLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103

HSP 2 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = -2

Query:  149 TDEIKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 445
            T  +   KPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+ L   +++A++
Sbjct:    5 TLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_DESVH	1.337e-20	51.06	10 kDa chaperonin OS=Desulfovibrio vulgaris (strai...	[more]
CH10_SYNJB	1.746e-20	50.98	10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=...	[more]
CH10_DESVM	1.746e-20	52.13	10 kDa chaperonin OS=Desulfovibrio vulgaris (strai...	[more]
CH10_SYNPW	2.978e-20	49.48	10 kDa chaperonin OS=Synechococcus sp. (strain WH7...	[more]
CH10_CYAP7	2.978e-20	47.87	10 kDa chaperonin OS=Cyanothece sp. (strain PCC 74...	[more]
CH10_DESHY	3.890e-20	50.00	10 kDa chaperonin OS=Desulfitobacterium hafniense ...	[more]
CH10_DESHD	3.890e-20	50.00	10 kDa chaperonin OS=Desulfitobacterium hafniense ...	[more]
CH10_DESDG	3.890e-20	48.94	10 kDa chaperonin OS=Desulfovibrio desulfuricans (...	[more]
CH10_THETN	5.080e-20	50.00	10 kDa chaperonin OS=Thermoanaerobacter tengcongen...	[more]
CH10_SYNJA	5.080e-20	50.00	10 kDa chaperonin OS=Synechococcus sp. (strain JA-...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT