CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_LISMC (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 41/91 (45.05%), Postives = 67/91 (73.63%), Query Frame = -2

Query:  152 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAV 424
            KPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR  +++A+
Sbjct:    3 KPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = -2

Query:  452 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGI 721
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++ I+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_LISIN (10 kDa chaperonin OS=Listeria innocua GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 41/91 (45.05%), Postives = 67/91 (73.63%), Query Frame = -2

Query:  152 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAV 424
            KPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR  +++A+
Sbjct:    3 KPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = -2

Query:  452 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGI 721
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++ I+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLOCE (10 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            IKPLGDRV++K+   EE T  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V+ SKY+GTE++F+G  + I+++ D++ I+E
Sbjct:    3 IKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTVVDGKEVKMEVKVGDRVLTSKYSGTEVKFDGQEYTILKQGDILAIVE 94

HSP 2 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV IK+ E+EETT  G++L  ++KEKP +  ++AVGPG +  +G    + +  G+ V+ SKY+G + K  DG  Y  L+  +++A++
Sbjct:    4 KPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTV-VDGKEVKMEVKVGDRVLTSKYSGTEVK-FDGQEYTILKQGDILAIV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLOB8 (10 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            +IKPLG+RV++K    EEKT  GI L   A+ +PQ  EVVAVG G  V   ++ + VK G +V+YSKYAGTE++ +G  + I+++DD++ I+E
Sbjct:    2 NIKPLGERVVIKKLEAEEKTKSGIVLTGTAKERPQEAEVVAVGPGAVVDGNRVAMEVKVGDKVLYSKYAGTEVKVDGEEYTILKQDDILAIVE 94

HSP 2 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL +RV IK  EAEE T  G++LT  +KE+P    V+AVGPG +  +GNR  + +  G+ V+YSKYAG + K  DG  Y  L+  +++A++
Sbjct:    2 NIKPLGERVVIKKLEAEEKTKSGIVLTGTAKERPQEAEVVAVGPGAV-VDGNRVAMEVKVGDKVLYSKYAGTEVK-VDGEEYTILKQDDILAIV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACWK (10 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ +AEE TA G++L E +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR  +++A++
Sbjct:    3 KPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAII 93

HSP 2 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 41/92 (44.57%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++ I+RE D++ I+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAII 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACSU (10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 40/92 (43.48%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  + I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93

HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ E+EE TA G++L +++KEKP  G ++A G G + E G R  L +  G+ +++SKYAG + K  +GT Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVK-YEGTEYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACA2 (10 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 40/92 (43.48%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  + I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93

HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ E+EE TA G++L +++KEKP  G ++A G G + E G R  L +  G+ +++SKYAG + K  +GT Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVK-YEGTEYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROVI (10 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            ++KPL DRV+VK    EEKT GG+++P   + KP  GEVVAVG GK     + L++ VK G +V+Y KY+GTE+   G ++ I+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94

HSP 2 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G +    +G +Y+ +R  ++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSGTEV-SVEGEDYLIMRESDIFAIL 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_GEOLS (10 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            ++PL DR++VK    EEKT GG+F+P  A+ KPQ GEV+AVG GK   + K   + VK G  +++ KYAGTE++ +G    ++REDDV+ ++E
Sbjct:    3 LRPLHDRIIVKRLEGEEKTAGGLFIPDTAKEKPQKGEVIAVGNGKKNDEGKCAPLDVKVGDSILFGKYAGTEVKVDGDEFLMMREDDVLAVIE 95

HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            +PL+DR+ +K  E EE TAGGL + + +KEKP  G VIAVG G  ++EG   PL +  G+++++ KYAG + K  DG  ++ +R  +V+AV+
Sbjct:    4 RPLHDRIIVKRLEGEEKTAGGLFIPDTAKEKPQKGEVIAVGNGKKNDEGKCAPLDVKVGDSILFGKYAGTEVK-VDGDEFLMMREDDVLAVI 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CORGL (10 kDa chaperonin OS=Corynebacterium glutamicum GN=groS PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ +++ EAE TTA GL++ +++KEKP   TVIAVGPG  D++GNR PL I   + V++S+Y G + K   G  Y+ L A +++A++
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDDKGNRIPLDIKEDDVVIFSRYGGTEIK-FGGVEYLLLSARDILAIV 97

HSP 2 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++F G  + ++   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDDKGNRIPLDIKEDDVVIFSRYGGTEIKFGGVEYLLLSARDILAIVE 98

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_LISMC	1.383e-17	45.05	10 kDa chaperonin OS=Listeria monocytogenes seroty...	[more]
CH10_LISIN	1.383e-17	45.05	10 kDa chaperonin OS=Listeria innocua GN=groS PE=3...	[more]
CH10_CLOCE	1.383e-17	46.74	10 kDa chaperonin OS=Clostridium cellulolyticum (s...	[more]
CH10_CLOB8	1.383e-17	47.31	10 kDa chaperonin OS=Clostridium beijerinckii (str...	[more]
CH10_BACWK	1.383e-17	47.83	10 kDa chaperonin OS=Bacillus weihenstephanensis (...	[more]
CH10_BACSU	1.383e-17	43.48	10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=...	[more]
CH10_BACA2	1.383e-17	43.48	10 kDa chaperonin OS=Bacillus amyloliquefaciens (s...	[more]
CH10_PROVI	1.807e-17	47.31	10 kDa chaperonin OS=Prosthecochloris vibrioformis...	[more]
CH10_GEOLS	1.807e-17	46.24	10 kDa chaperonin OS=Geobacter lovleyi (strain ATC...	[more]
CH10_CORGL	1.807e-17	43.62	10 kDa chaperonin OS=Corynebacterium glutamicum GN...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT