CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACC0 (10 kDa chaperonin OS=Bacillus cereus (strain AH820) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

HSP 2 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++ I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACAN (10 kDa chaperonin OS=Bacillus anthracis GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

HSP 2 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++ I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACAC (10 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

HSP 2 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++ I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACAA (10 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

HSP 2 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++ I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_ALKOO (10 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            +IKPLGDRV++K    EE T  GI LP +A+ +PQ  EV+AVG G  +   ++ + VK G +VI+SKYAGTE++F+G  + I+++ D++ ++E
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGVIEGKEVVMEVKVGDKVIFSKYAGTEVKFDGVEYTILKQSDILAVVE 94

HSP 2 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL DRV IK  EAEETT  G++L  ++KE+P +  V+AVGPG +  EG    + +  G+ V++SKYAG + K  DG  Y  L+  +++AV+
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGV-IEGKEVVMEVKVGDKVIFSKYAGTEVK-FDGVEYTILKQSDILAVV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STRAW (10 kDa chaperonin OS=Streptomyces avermitilis GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DR+ ++  +AE+TTA GL++ + +KEKP  G V+AVGPG   E+GNR PL +  G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   11 KPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVTVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100

HSP 2 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = -2

Query:  446 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 739
            A    +IKPL DR++V+    E+ T  G+ +P  A+ KPQ G V+AVG G+     +L + V  G  V+YSKY GTE+++NG  + ++   DV+ I+E
Sbjct:    4 ASSKVAIKPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRFEDGNRLPLDVTVGDVVLYSKYGGTEVKYNGEEYLVLSARDVLAIVE 101

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PELPD (10 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            ++PL DR+LVK    E KT GG+F+P  A+ KPQ GEVVA G GK     K L + VK G +V++ KY+GTE++ +G +  ++REDD++ ++E
Sbjct:    3 LRPLHDRILVKRVEEETKTAGGLFIPETAKEKPQRGEVVAAGNGKKTEDGKVLPLDVKVGDKVLFGKYSGTEVKVDGEDFLMMREDDILAVVE 95

HSP 2 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            +PL+DR+ +K  E E  TAGGL + E +KEKP  G V+A G G   E+G   PL +  G+ V++ KY+G + K  DG +++ +R  +++AV+
Sbjct:    4 RPLHDRILVKRVEEETKTAGGLFIPETAKEKPQRGEVVAAGNGKKTEDGKVLPLDVKVGDKVLFGKYSGTEVK-VDGEDFLMMREDDILAVV 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_DESAA (10 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            ++PL DR+LVK    E KT GGI +P  A+ KP  GE+VAVG G+      K+ + VK G +V++ KY+GTE++  G  + I+REDDV+GI++
Sbjct:    3 LQPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVKIEGEEYLIMREDDVLGIVQ 95

HSP 2 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            +PL DR+ +K    E  T GG+++ + +KEKP+ G ++AVGPG   E+G +  L +  G+ V++ KY+G + K  +G  Y+ +R  +V+ ++
Sbjct:    4 QPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVK-IEGEEYLIMREDDVLGIV 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACST (10 kDa chaperonin OS=Bacillus stearothermophilus GN=groS PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  + I+RE D++ ++
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGERVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93

HSP 2 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I+V E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG + K  DG  Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGERVAPEVEVGDRIIFSKYAGTEVK-YDGKEYLILRESDILAVI 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACCR (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groS PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 41/92 (44.57%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++ I+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR  +++AV+
Sbjct:    3 KPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_BACC0	2.360e-17	47.83	10 kDa chaperonin OS=Bacillus cereus (strain AH820...	[more]
CH10_BACAN	2.360e-17	47.83	10 kDa chaperonin OS=Bacillus anthracis GN=groS PE...	[more]
CH10_BACAC	2.360e-17	47.83	10 kDa chaperonin OS=Bacillus anthracis (strain CD...	[more]
CH10_BACAA	2.360e-17	47.83	10 kDa chaperonin OS=Bacillus anthracis (strain A0...	[more]
CH10_ALKOO	2.360e-17	45.16	10 kDa chaperonin OS=Alkaliphilus oremlandii (stra...	[more]
CH10_STRAW	3.082e-17	46.74	10 kDa chaperonin OS=Streptomyces avermitilis GN=g...	[more]
CH10_PELPD	3.082e-17	46.24	10 kDa chaperonin OS=Pelobacter propionicus (strai...	[more]
CH10_DESAA	3.082e-17	46.24	10 kDa chaperonin OS=Desulfatibacillum alkenivoran...	[more]
CH10_BACST	3.082e-17	44.57	10 kDa chaperonin OS=Bacillus stearothermophilus G...	[more]
CH10_BACCR	3.082e-17	44.57	10 kDa chaperonin OS=Bacillus cereus (strain ATCC ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT