CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROMP (10 kDa chaperonin OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102

HSP 2 Score: 85.8853 bits (211), Expect = 2.609e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  + ++ E D++ ++
Sbjct:    2 AAVSLTVSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROM5 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9515) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102

HSP 2 Score: 85.8853 bits (211), Expect = 2.609e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  + ++ E D++ ++
Sbjct:    2 AAVSLTVSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNSC (10 kDa chaperonin OS=Synechococcus sp. (strain CC9605) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDNVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK           V  G  V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDNVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL +++KEKP IG V+AVG G  +++G+R  + +  G+ V+YSKYAG D K S G +Y+ L   +++A +
Sbjct:    8 VSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLS-GDDYVLLSEKDILATV 102

HSP 2 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = -2

Query:  458 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVV 748
            A ++   +++KPLGDRV VK+   EEKT GGI LP +A+ KPQ GEVVAVGEGK     ++  + VK G +V+YSKYAGT+++ +G ++ ++ E D++
Sbjct:    2 AAISINVSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLSGDDYVLLSEKDIL 99

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNS9 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9902) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAIV 102

HSP 2 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++     + ++ E D++ I+
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAIV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G  ++ L   +++A +
Sbjct:   12 KPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIK-LGGEEFVLLSEKDILAAV 102

HSP 2 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = -2

Query:  458 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVV 748
            A V+   T++KPLGDRV VK+   EEKT GGIFLP AA+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++  G    ++ E D++
Sbjct:    2 AAVSINVTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLAM3 (10 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DR+ I+  EAE+TTA GL++ + +KEKP  G V+AVGPG +D+ GNR PL +A G+ V+YSKY G + K  DG + + L A +V+AV+
Sbjct:    6 KPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-YDGQDLLVLSARDVLAVI 96

HSP 2 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            SIKPL DR++++    E+ T  G+ +P  A+ KPQ GEVVAVG G+      +  LD++V  G +VIYSKY GTE++++G +  ++   DV+ ++E
Sbjct:    4 SIKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKYDGQDLLVLSARDVLAVIE 97

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102

HSP 2 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  + ++ E D++ ++
Sbjct:    2 AAVSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_PROMP	5.080e-20	47.92	10 kDa chaperonin OS=Prochlorococcus marinus subsp...	[more]
CH10_PROM5	5.080e-20	47.92	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_SYNSC	6.635e-20	48.45	10 kDa chaperonin OS=Synechococcus sp. (strain CC9...	[more]
CH10_SYNP2	6.635e-20	47.92	10 kDa chaperonin OS=Synechococcus sp. (strain ATC...	[more]
CH10_SYNS9	8.665e-20	48.45	10 kDa chaperonin OS=Synechococcus sp. (strain CC9...	[more]
CH10_PROMT	8.665e-20	49.48	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM1	8.665e-20	49.48	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_MICAN	8.665e-20	48.91	10 kDa chaperonin OS=Microcystis aeruginosa (strai...	[more]
CH10_CLAM3	8.665e-20	51.09	10 kDa chaperonin OS=Clavibacter michiganensis sub...	[more]
CH10_PROMS	1.132e-19	47.92	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT