CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROM4 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9211) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_LEIXX (10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DR+ IK  EAE+TTA GL++ + +KEKP  G V AVGPG +D+ GNR PL +A G+ V+YSKY G + K   G +Y+ L A +V+AV+
Sbjct:    6 KPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-FGGQDYLVLSARDVLAVV 96

HSP 2 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            SIKPL DR+++K    E+ T  G+ +P  A+ KPQ G V AVG G+      +  LD++V  G +VIYSKY GTE++F G ++ ++   DV+ ++
Sbjct:    4 SIKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKFGGQDYLVLSARDVLAVV 96

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_EXISA (10 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV++++   EEKT GGI LP  A+ KPQ G+VVAVG G+   + K +D+ VK    VIYSKYAGTE++ +G  + IVRE D++ I+
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVKHDGKEYLIVRESDILAIV 93

HSP 2 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I+V E EE T GG++L + +KEKP  G V+AVG G + +EG R  L +   + V+YSKYAG + K  DG  Y+ +R  +++A++
Sbjct:    3 KPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVK-HDGKEYLIVRESDILAIV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VKI   EEKT GGI LP  A+ KPQ GEVV VG GK+          V  G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = -2

Query:  155 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMA 436
            +   KPL DR+F+KV+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100

HSP 2 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = -2

Query:  458 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVV 748
            A ++   +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G ++ ++ E D++
Sbjct:    2 AAISINVSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BEUC1 (10 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DR+ +K  EAE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+AV+
Sbjct:    6 KPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYA-GQEYLILSARDVLAVV 96

HSP 2 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            SIKPL DR++VK    E+ T  G+ +P  A+ KPQ GEV+A+G G+      ++ + V  G  VIYSKY GTE+++ G  + I+   DV+ +++
Sbjct:    4 SIKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYAGQEYLILSARDVLAVVQ 97

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV +K+   EEKT GGI LP  A+ KPQ GEV  VG GK           V  G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  H ++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94

HSP 2 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 43/94 (45.74%), Postives = 67/94 (71.28%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV+
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVI 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  H ++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94

HSP 2 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 43/94 (45.74%), Postives = 67/94 (71.28%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV+
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVI 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = -2

Query:  149 PLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 421
            PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV+
Sbjct:   13 PLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVV 102

HSP 2 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK           VK G +V+YSKYAGT+++    ++ ++ E D++ ++
Sbjct:    2 AAVSLSVSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_PROM4	1.132e-19	49.48	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_LEIXX	1.132e-19	52.17	10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN...	[more]
CH10_EXISA	1.132e-19	52.17	10 kDa chaperonin OS=Exiguobacterium sp. (strain A...	[more]
CH10_SYNS3	1.478e-19	47.42	10 kDa chaperonin OS=Synechococcus sp. (strain CC9...	[more]
CH10_CYAA5	1.478e-19	48.94	10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5...	[more]
CH10_BEUC1	1.478e-19	48.91	10 kDa chaperonin OS=Beutenbergia cavernae (strain...	[more]
CH10_PROMA	1.930e-19	49.48	10 kDa chaperonin OS=Prochlorococcus marinus GN=gr...	[more]
CH10_LAWIP	1.930e-19	49.46	10 kDa chaperonin OS=Lawsonia intracellularis (str...	[more]
CH10_LAWIN	1.930e-19	49.46	10 kDa chaperonin OS=Lawsonia intracellularis GN=g...	[more]
CH10_SYNP6	2.521e-19	50.00	10 kDa chaperonin OS=Synechococcus sp. (strain ATC...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT