CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = -2

Query:  149 PLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 421
            PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV+
Sbjct:   13 PLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVV 102

HSP 2 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK           VK G +V+YSKYAGT+++    ++ ++ E D++ ++
Sbjct:    2 AAVSLSVSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102

HSP 2 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  + ++ E D++ ++
Sbjct:    2 AAVSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102

HSP 2 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  + ++ E D++ ++
Sbjct:    2 AAVSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102

HSP 2 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  + ++ E D++ ++
Sbjct:    2 AAVSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = -2

Query:  149 TDEIKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 445
            T  +   KPL +RVF+KV+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D K   G  Y+ L   +++A++
Sbjct:    5 TLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIV 102

HSP 2 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V    +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK      + ++ VK G +V+YSKYAGT+++  G  + ++ E D++ I+
Sbjct:    2 AAVTLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K   G  ++ L   +++A++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGGDEFVLLTEKDILAIV 102

HSP 2 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV +K+   EEKT GGI LP  A+ KPQ GEVV VG GK           V  G +V+YSKYAGT+++  G    ++ E D++ I+
Sbjct:    2 AAVSLSVSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGGDEFVLLTEKDILAIV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K S    Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLST-DEYVLLSEKDILAVV 102

HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK           V  G +V+YSKYAGT+++ +   + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL+DRVF+KV  +EE TAGGL L + +KEKP +G V+A+GPG  +E+G+R+ L I  G+ V+YSKYAG D K G++   Y+ L   +++AV+
Sbjct:    8 VSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTE--EYVLLSEKDILAVV 102

HSP 2 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A ++   +++KPL DRV VK+   EEKT GG++LP  A+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AALSLSVSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = -2

Query:  155 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMA 436
            +   KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIK-LGGDDYVLLTEKDILA 100

HSP 2 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = -2

Query:  458 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVV 748
            A ++   +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK         + VK G +V+YSKYAGT+++  G ++ ++ E D++
Sbjct:    2 AAISINVSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_NOCSJ (10 kDa chaperonin OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL DR+ +K  +AE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR PL +  G+ V+YSKY G + K + G  Y+ L A +V+AV+
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTVGDKVIYSKYGGTEVKYA-GEEYLILSARDVLAVV 96

HSP 2 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL DR++VK    E+ T  G+ +P  A+ KPQ GEV+A+G G+      +  LD++V  G +VIYSKY GTE+++ G  + I+   DV+ ++
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTV--GDKVIYSKYGGTEVKYAGEEYLILSARDVLAVV 96

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_SYNE7	2.521e-19	50.00	10 kDa chaperonin OS=Synechococcus elongatus (stra...	[more]
CH10_PROM9	2.521e-19	46.88	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM2	2.521e-19	46.88	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM0	2.521e-19	46.88	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_TRIEI	3.293e-19	43.43	10 kDa chaperonin OS=Trichodesmium erythraeum (str...	[more]
CH10_SYNPX	3.293e-19	45.83	10 kDa chaperonin OS=Synechococcus sp. (strain WH8...	[more]
CH10_PROMM	3.293e-19	46.88	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_NOSP7	4.300e-19	48.45	10 kDa chaperonin OS=Nostoc punctiforme (strain AT...	[more]
CH10_SYNY3	5.617e-19	47.87	10 kDa chaperonin OS=Synechocystis sp. (strain PCC...	[more]
CH10_NOCSJ	5.617e-19	46.81	10 kDa chaperonin OS=Nocardioides sp. (strain BAA-...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT