CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAS (10 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAR (10 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAN (10 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=groS PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAM (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=groS PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAE (10 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAC (10 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAAB (10 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAA9 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAA8 (10 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_STAA3 (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KP+ +RV I+  E E+TT  G++LT+++KEK + G ++AVG G L  +G R    +  G+ V++ +YAG + K  D   Y+ L   +++AV+
Sbjct:    3 KPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

HSP 2 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 31/93 (33.33%), Postives = 60/93 (64.52%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   + ++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_STAAS	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAR	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAN	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAM	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAE	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAC	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAB	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA9	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA8	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA3	6.650e-12	36.96	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT