CX672119

Overview
NameCX672119
Unique NameCX672119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_VIBF1 (10 kDa chaperonin OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV ++  E E  +AGG++LT ++ EK + GTV+AVG G + E G  +PL +  G++V++++  G   +  DG   + +   ++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGTVLAVGKGRILENGTVQPLDVKVGDSVIFAEGYGTKSEKIDGKEVLIMSENDIMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SHESR (10 kDa chaperonin OS=Shewanella sp. (strain MR-7) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 34/94 (36.17%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV +K  E E T+AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+ V++++  G   +  DG   + L   ++MA++
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEVLAVGNGRILENGTVRPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SHESM (10 kDa chaperonin OS=Shewanella sp. (strain MR-4) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 34/94 (36.17%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV +K  E E T+AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+ V++++  G   +  DG   + L   ++MA++
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEVLAVGNGRILENGTVRPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SHESA (10 kDa chaperonin OS=Shewanella sp. (strain ANA-3) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 34/94 (36.17%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV +K  E E T+AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+ V++++  G   +  DG   + L   ++MA++
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEVLAVGNGRILENGTVRPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_SHEON (10 kDa chaperonin OS=Shewanella oneidensis GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 34/94 (36.17%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV +K  E E T+AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+ V++++  G   +  DG   + L   ++MA++
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEVLAVGNGRILENGTVRPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH101_VIBVY (10 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 32/94 (34.04%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV ++  E E  +AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+TV++++  G   +  DG   + +   ++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVQPLDVKVGDTVIFAESYGTKTEKIDGKEVLIMSENDIMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH101_VIBVU (10 kDa chaperonin 1 OS=Vibrio vulnificus GN=groS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 32/94 (34.04%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + +PL+DRV ++  E E  +AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+TV++++  G   +  DG   + +   ++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVQPLDVKVGDTVIFAESYGTKTEKIDGKEVLIMSENDIMAIV 95          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_TREPS (10 kDa chaperonin OS=Treponema pallidum subsp. pallidum (strain SS14) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            I PL DRVLVK    E KT  GI +P  AQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  H +++  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_TREPA (10 kDa chaperonin OS=Treponema pallidum GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            I PL DRVLVK    E KT  GI +P  AQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  H +++  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_THEAB (10 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  446 PLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 715
            PLG R+L+K    E++T+GGI LP  A+ KP   E+VAVG  +       D+ +  G +VI+SKY+GTE++    ++ I+  +D++  +E
Sbjct:    5 PLGSRLLIKPIQEEKRTEGGIVLPDTAKEKPMKAEIVAVGNLEDA-----DVDLHVGDKVIFSKYSGTEIKIEEEDYIIIDVEDILAKIE 89          
The following BLAST results are available for this feature:
BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_VIBF15.630e-1134.0410 kDa chaperonin OS=Vibrio fischeri (strain ATCC ... [more]
CH10_SHESR5.630e-1136.1710 kDa chaperonin OS=Shewanella sp. (strain MR-7) ... [more]
CH10_SHESM5.630e-1136.1710 kDa chaperonin OS=Shewanella sp. (strain MR-4) ... [more]
CH10_SHESA5.630e-1136.1710 kDa chaperonin OS=Shewanella sp. (strain ANA-3)... [more]
CH10_SHEON5.630e-1136.1710 kDa chaperonin OS=Shewanella oneidensis GN=groS... [more]
CH101_VIBVY5.630e-1134.0410 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH101_VIBVU5.630e-1134.0410 kDa chaperonin 1 OS=Vibrio vulnificus GN=groS1 ... [more]
CH10_TREPS7.352e-1140.2210 kDa chaperonin OS=Treponema pallidum subsp. pal... [more]
CH10_TREPA7.352e-1140.2210 kDa chaperonin OS=Treponema pallidum GN=groS PE... [more]
CH10_THEAB7.352e-1137.7810 kDa chaperonin OS=Thermosipho africanus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT
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