CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            IKPLGDRV++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE+++ G  + I+RE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92

HSP 2 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I++ E EETTA G++L +++KEKP  G V+AVG G + E G +  L ++ G+ +++SK+AG + K  +GT Y+ LR  +++A++
Sbjct:    3 KPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRV-ENGEKIALEVSEGDRIIFSKFAGTEVK-YEGTEYLILRENDILAII 92

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_NOCFA (10 kDa chaperonin OS=Nocardia farcinica GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +  G+TV+YSKY G + K   G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVQEGDTVIYSKYGGTEIK-YQGEEYLILSARDVLAVV 98

HSP 2 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V+ G  VIYSKY GTE+++ G  + I+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVQEGDTVIYSKYGGTEIKYQGEEYLILSARDVLAVV 98

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLOBB (10 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V   K+++ VK G +V+YSKY+GTE++ +G  + I+++DD++ I+E
Sbjct:    3 IKPLGNRVVIKKLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94

HSP 2 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL +RV IK  EAEE T  G++LT ++KE P    V+AVGPG +  +G +  + +  G+ V+YSKY+G + K  DG  Y+ L+  +++A++
Sbjct:    4 KPLGNRVVIKKLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSI-VDGTKIEMEVKVGDKVLYSKYSGTEVK-LDGEEYMILKQDDILAIV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLOBA (10 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V   K+++ VK G +V+YSKY+GTE++ +G  + I+++DD++ I+E
Sbjct:    3 IKPLGNRVVIKRLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94

HSP 2 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL +RV IK  EAEE T  G++LT ++KE P    V+AVGPG +  +G +  + +  G+ V+YSKY+G + K  DG  Y+ L+  +++A++
Sbjct:    4 KPLGNRVVIKRLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSI-VDGTKIEMEVKVGDKVLYSKYSGTEVK-LDGEEYMILKQDDILAIV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CHLPD (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            ++KPL DRV+VK    EEKT GG+ +P   + KPQ GEVVAVG GK     + L++ +K G +V+Y KY+GTE+   G ++ I+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTEVSVEGEDYLIMRESDIFAILD 95

HSP 2 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL DRV +K A AEE T GGL++ +  KEKP  G V+AVG G + + G    + I  G  V+Y KY+G +    +G +Y+ +R  ++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTEV-SVEGEDYLIMRESDIFAIL 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = -2

Query:  449 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 721
            +KPLGDRV+++    EEKT  GI LP  A+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++++G  + I+RE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93

HSP 2 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV I+  E EE TA G++L + +KEKP  G V+AVG G + E G +  L +  G++V++SKYAG + K  DG  Y+ LR  +++A++
Sbjct:    3 KPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVK-YDGKEYLILRESDILAII 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_ARTS2 (10 kDa chaperonin OS=Arthrobacter sp. (strain FB24) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DR+ ++  EAE+TTA GL++ ++++EKP  G V+AVGPG   E+GNR P+ +A G+ V+YSKY G + K + GT Y+ L A +V+A++
Sbjct:    6 KPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAVGPGRF-EDGNRVPVDVAVGDVVIYSKYGGTEVK-TGGTEYLVLSARDVLAIV 95

HSP 2 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            SIKPL DR++V+    E+ T  G+ +P +AQ KPQ GEVVAVG G+     ++ + V  G  VIYSKY GTE++  G  + ++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAVGPGRFEDGNRVPVDVAVGDVVIYSKYGGTEVKTGGTEYLVLSARDVLAIV 95

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = -2

Query:  449 AVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 748
            A V+   +++KPLGDRV VK+   EEKT GG++LP  A+ KPQ GEVVA+G GK     ++ ++ VK G +V+YSKYAGT+++     + ++ E D++ ++
Sbjct:    2 AAVSLSVSTVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTEEYVLLSEKDILAVV 102

HSP 2 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 44/97 (45.36%), Postives = 68/97 (70.10%), Query Frame = -2

Query:  149 IKDFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRAFEVMAVL 436
            +   KPL DRVF+KV+ +EE TAGGL L + +KEKP +G V+A+G G  +++G+R+ L +  G+ V+YSKYAG D K G++   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTE--EYVLLSEKDILAVV 102

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_MYCVP (10 kDa chaperonin OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVV 98

HSP 2 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  + I+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_MYCPA (10 kDa chaperonin OS=Mycobacterium paratuberculosis GN=groS PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVV 98

HSP 2 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  G  VIYSKY GTE+++NG  + I+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_OCEIH	2.787e-18	46.15	10 kDa chaperonin OS=Oceanobacillus iheyensis GN=g...	[more]
CH10_NOCFA	2.787e-18	47.37	10 kDa chaperonin OS=Nocardia farcinica GN=groS PE...	[more]
CH10_CLOBB	3.641e-18	47.83	10 kDa chaperonin OS=Clostridium botulinum (strain...	[more]
CH10_CLOBA	3.641e-18	47.83	10 kDa chaperonin OS=Clostridium botulinum (strain...	[more]
CH10_CHLPD	3.641e-18	46.81	10 kDa chaperonin OS=Chlorobium phaeobacteroides (...	[more]
CH10_BACHD	3.641e-18	50.00	10 kDa chaperonin OS=Bacillus halodurans GN=groS P...	[more]
CH10_ARTS2	3.641e-18	47.83	10 kDa chaperonin OS=Arthrobacter sp. (strain FB24...	[more]
CH10_ANASP	3.641e-18	43.56	10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120...	[more]
CH10_MYCVP	4.755e-18	46.32	10 kDa chaperonin OS=Mycobacterium vanbaalenii (st...	[more]
CH10_MYCPA	4.755e-18	47.37	10 kDa chaperonin OS=Mycobacterium paratuberculosi...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT