CX672119 | Citrus Genome Database

Overview


Name	CX672119
Unique Name	CX672119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	755

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_MYCGI (10 kDa chaperonin OS=Mycobacterium gilvum (strain PYR-GCK) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVV 98

HSP 2 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  + I+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_MYCAV (10 kDa chaperonin OS=Mycobacterium avium GN=groS PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVV 98

HSP 2 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  G  VIYSKY GTE+++NG  + I+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_MYCA1 (10 kDa chaperonin OS=Mycobacterium avium (strain 104) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVV 98

HSP 2 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = -2

Query:  449 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGIL 724
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  G  VIYSKY GTE+++NG  + I+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_GEOUR (10 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            ++P+ DR++VK    E KT GGIF+P  A+ KP  GEVVAVG GK     K L + VK G +V++ KY+GTE++  G +  I+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIKVEGQDFLIMREDDILGVIE 95

HSP 2 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            +P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K  +G +++ +R  +++ V+
Sbjct:    4 RPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIK-VEGQDFLIMREDDILGVI 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            ++PL DR+LVK    E+ T GGIF+P  A+ KPQ GE+VAVG GK     K + I +K G +V++ KYAGT+++  G +  I+REDD++G++E
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVIE 95

HSP 2 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            +PL DR+ +K  E E+ TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K  +G +++ +R  +++ V+
Sbjct:    4 RPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIK-VEGEDFLIMREDDILGVI 94

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLONN (10 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V++SKY+GTE++ +G  + I+R++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVRMEVKVGDKVLFSKYSGTEVKLDGEEYTILRQNDILAIVE 94

HSP 2 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV IK  EAEE T  G++L  ++KEKP    ++AVGPG L  +G    + +  G+ V++SKY+G + K  DG  Y  LR  +++A++
Sbjct:    4 KPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGL-VDGKEVRMEVKVGDKVLFSKYSGTEVK-LDGEEYTILRQNDILAIV 93

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_PROAC (10 kDa chaperonin OS=Propionibacterium acnes GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV ++  EAE+TTA GL++ + +KEKP  G VI+ GPG +D++G R P+ +  G+ V++SKY G + K  DG  Y+ L A +++AV+
Sbjct:    6 KPLEDRVLVQPLEAEQTTASGLVIPDTAKEKPQEGKVISAGPGRVDDKGTRVPMDVKEGDVVIFSKYGGTEVK-YDGQEYLLLNARDILAVV 96

HSP 2 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = -2

Query:  446 TSIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 727
            T+IKPL DRVLV+    E+ T  G+ +P  A+ KPQ G+V++ G G+   K  ++ + VK G  VI+SKY GTE++++G  + ++   D++ ++E
Sbjct:    3 TTIKPLEDRVLVQPLEAEQTTASGLVIPDTAKEKPQEGKVISAGPGRVDDKGTRVPMDVKEGDVVIFSKYGGTEVKYDGQEYLLLNARDILAVVE 97

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 42/91 (46.15%), Postives = 67/91 (73.63%), Query Frame = -2

Query:  152 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAV 424
            KPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + E G ++PL +A G+TV+++KY+G +    +GT+Y+ LR  +++A+
Sbjct:    3 KPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = -2

Query:  452 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGI 721
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++ I+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_COREF (10 kDa chaperonin OS=Corynebacterium efficiens GN=groS PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = -2

Query:  149 DFKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 430
            + KPL D++ +++ EAE TTA GL++ +++KEKP   TVIAVGPG  DE+G R PL I   + V++S+Y G + K  DG  Y+ L A +++A++
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDEKGERIPLDIKEDDVVIFSRYGGTEIK-FDGVEYLLLSARDILAIV 97

HSP 2 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 35/94 (37.23%), Postives = 60/94 (63.83%), Query Frame = -2

Query:  446 SIKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 724
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++F+G  + ++   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDEKGERIPLDIKEDDVVIFSRYGGTEIKFDGVEYLLLSARDILAIVE 98

[Close]

BLAST of CX672119 vs. ExPASy Swiss-Prot
Match: CH10_CLOBO (10 kDa chaperonin OS=Clostridium botulinum GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = -2

Query:  446 IKPLGDRVLVKIKTVEEKTDGGIFLPFAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHFIVREDDVVGILE 721
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++++ VK G +V++S+YAG E++ +G  + I+R++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVNMEVKVGDRVLFSQYAGNEVKIDGEEYIILRQNDILAIVE 94

HSP 2 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = -2

Query:  149 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRAFEVMAVL 424
            KPL DRV IK  EAEE T  G++L  ++KEKP    ++AVGPG L  +G    + +  G+ V++S+YAGN+ K  DG  YI LR  +++A++
Sbjct:    4 KPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGL-VDGKEVNMEVKVGDRVLFSQYAGNEVK-IDGEEYIILRQNDILAIV 93

The following BLAST results are available for this feature:

BLAST of CX672119 vs. ExPASy Swiss-Prot

BLAST of CX672119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_MYCGI	4.755e-18	46.32	10 kDa chaperonin OS=Mycobacterium gilvum (strain ...	[more]
CH10_MYCAV	4.755e-18	47.37	10 kDa chaperonin OS=Mycobacterium avium GN=groS P...	[more]
CH10_MYCA1	4.755e-18	47.37	10 kDa chaperonin OS=Mycobacterium avium (strain 1...	[more]
CH10_GEOUR	4.755e-18	47.31	10 kDa chaperonin OS=Geobacter uraniireducens (str...	[more]
CH10_GEOMG	4.755e-18	47.31	10 kDa chaperonin OS=Geobacter metallireducens (st...	[more]
CH10_CLONN	4.755e-18	47.83	10 kDa chaperonin OS=Clostridium novyi (strain NT)...	[more]
CH10_PROAC	6.210e-18	45.65	10 kDa chaperonin OS=Propionibacterium acnes GN=gr...	[more]
CH10_LISW6	6.210e-18	46.15	10 kDa chaperonin OS=Listeria welshimeri serovar 6...	[more]
CH10_COREF	6.210e-18	44.68	10 kDa chaperonin OS=Corynebacterium efficiens GN=...	[more]
CH10_CLOBO	6.210e-18	46.74	10 kDa chaperonin OS=Clostridium botulinum GN=groS...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672119 ID=CX672119; Name=CX672119; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGATCAAGCTGCAATTCTTTATGTTCAAATAAAA
TTACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAATTCAAT
TCACTAATACATATAAAGCCTCCCTCAAGTAAACACAAACAACTAAAAAA
GCACAGCCATCACTTCAAAAGCTCTTAAAGCAATGTAGTTGGTACCATCA
CTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTGTTCCC
TGGGGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAAAGGACCGG
GTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTGCCTCC
GTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACCTTGAT
GAAAACTCTGTCATTAAGGGGCTTAAAATCCTTGATTTCATCTGTTTCAA
GAATGCCAACTACGTCATCCTCCCTCACTATGAAATGATTTGCGCCGTTG
AACTCCAACTCAGTCCCTGCATACTTCGAATAAATGACCTGGGTCCCAGG
CTTCACAGATATGTCCAGTTTAGCCTTCCCAACTGTCTTCCCCTCGCCAA
CAGCTACCACCTCACCTGCTTGAGGCTTTGTTTGAGCTGCAAATGGCAAA
AAAATACCACCATCAGTTTTCTCCTCTACAGTCTTGATTTTCACCAGCAC
TCTATCACCCAAAGGTTTAATTGAAGTGTACTTGGGAGCCACGACTGCAG
CGGCT