CX672118

Overview
NameCX672118
Unique NameCX672118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672118_ssr14 microsatellite CX672118_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2264 contig Csv1_Contig2264:37..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.349e-31
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  183 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            A KR+ ++   L +DPP+  S  P    +  W A I GP D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++  Y    RE
Sbjct:    2 AFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.068e-31
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  183 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            A KR+ ++   L +DPP+  S  P    +  W A I GP D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y    RE
Sbjct:    2 ALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTARE 140          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.430e-30
Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            KR+ ++   L +DPPA  S  P  + +  W A I GP D+P+ GG F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y    +E
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 57/137 (41.61%), Postives = 92/137 (67.15%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            +R++++ +RL Q+P  GI+  P +N+   ++ ++ GP+D+P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLD+L+++WSP   +  IL SIQ+LL  PNP+ P  ++ A ++  N+ E  R  RE
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNARE 142          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 61/158 (38.61%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  183 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 614
            A +RLM+++K L ++ P GI+  P  ++    W+ +I GPD TP++GG +  TL+F  DYP  PPT++F    FHPN+Y DG++C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A +M+ E++ EY R VR +  ++
Sbjct:    6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            KR+ ++   L++DPP   S  P  + +  W A I GP D+P+ GG F L++ F  DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++  ++ +Y    RE
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.871e-29
Identity = 63/138 (45.65%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 602
            KRL  +   L      GIS  P++++I  W   I G  DT ++G  ++L+L F+ DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+++S N+ EY + V ++
Sbjct:   38 KRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWS-NQEEYRKMVEKL 174          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.871e-29
Identity = 61/161 (37.89%), Postives = 95/161 (59.01%), Query Frame = 3
Query:  174 STPARKRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 614
            S+ + + L +  K +Q++PP G S G   D SI  W  +I GP+DT ++GG F  TL F +DYP  PP ++F + ++HPN++ +G +C+ IL               +W P++    IL S+ S+L  PN  SPAN +AA+ F EN +E+ +RVR +V +S
Sbjct:    3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.750e-29
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 587
            KRL  +   L   P  GIS  P  ++I  W   I G  DT ++   FK++L+F  DYP KPPTV+F ++ FHPN+  +G+ICLDIL+++WSP+Y+V ++L SIQSLL +PN  SP NS AA ++S N+ EY +
Sbjct:    9 KRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWS-NQDEYKK 140          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.750e-29
Identity = 55/137 (40.15%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            KR+ ++   L +DPP+  S  P  + +  W A I GP D+P+ GG F L++ F  DYP KPP +   ++++HPNI ++G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++ +++++Y    +E
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKE 140          
The following BLAST results are available for this feature:
BLAST of CX672118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBC1_COLGL2.349e-3143.88Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_MAGGR3.068e-3143.88Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC5_YEAST4.430e-3043.07Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBE2N_DROME5.786e-3041.61Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC7_SCHPO7.556e-3038.61Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC4_YEAST7.556e-3042.34Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC20_ARATH2.871e-2945.65Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC15_SCHPO2.871e-2937.89Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBE2C_DICDI3.750e-2947.37Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC4_CANAL3.750e-2940.15Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_15B01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B01-D1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672118 ID=CX672118; Name=CX672118; organism=Citrus sinensis; type=EST; length=789bp
CTGACCTGAACGACTCTCTCTCTCTTGTTTCTCTGATCAAATTGAGTACC
ATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAA
ATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCG
TCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATG
AGGGATTTTAAGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGC
TCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGG
ATGATACCCCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACA
GAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTT
CCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAA
ATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGTCAATTCAG
TCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGC
GCGGATGTTTAGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAA
TTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAG
GGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTC
AAAAGGTTGGTGGTGTGAACTCTTGACATGTTTTATGTTTGTTTCGGCTT
ATGAGGATGGATGGTTGGCCTCTTATTGTTAATTTCTCG
back to top