CX672118

Overview
NameCX672118
Unique NameCX672118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672118_ssr14 microsatellite CX672118_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2264 contig Csv1_Contig2264:37..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.576e-27
Identity = 60/137 (43.80%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            KRL ++ + L      GI+  P  +++  W A + GP DT ++   +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA M+S N+ EY + + E
Sbjct:   33 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 168          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.688e-27
Identity = 54/137 (39.42%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            +R++++ +RL  +P  GIS +P + ++  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKE 144          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.688e-27
Identity = 53/130 (40.77%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 578
            +R++++ +RL  +P  GIS +P ++++  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAE 137          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.584e-27
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 3
Query:  171 MSTPARKRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 614
            M++ A   L +  K L + P  G S G   + +I  W+  I GP DT ++GG F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + + + E+ ++V   V +S
Sbjct:    1 MASQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKS 162          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.987e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 578
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.820e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 611
            KRL ++   L      GIS  P   +I  W   I GP +T + G T++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA M+++ K EY + +    E+
Sbjct:   35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKKYLDAFYEK 174          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.021e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 596
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.021e-26
Identity = 52/137 (37.96%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 599
            KR++++ ++L  DP  GI+  P D+++  +   I GP+ +P++ G F+L L   +DYP + P VRF+++++HPNI   G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +N++    + RE
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  189 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 578
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQ 135          
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 596
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
The following BLAST results are available for this feature:
BLAST of CX672118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBE2C_SPISO1.576e-2743.80Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC36_ARATH2.688e-2739.42Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH2.688e-2740.77Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC7_ARATH4.584e-2737.65Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBE2N_MACFA5.987e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2C_DROME7.820e-2742.55Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC9A_DANRE1.021e-2640.27SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC13_YEAST1.021e-2637.96Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2N_RAT1.334e-2640.00Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC9_XENTR1.334e-2640.27SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B01-D1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672118 ID=CX672118; Name=CX672118; organism=Citrus sinensis; type=EST; length=789bp
CTGACCTGAACGACTCTCTCTCTCTTGTTTCTCTGATCAAATTGAGTACC
ATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAA
ATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCG
TCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATG
AGGGATTTTAAGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGC
TCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGG
ATGATACCCCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACA
GAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTT
CCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAA
ATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGTCAATTCAG
TCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGC
GCGGATGTTTAGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAA
TTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAG
GGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTC
AAAAGGTTGGTGGTGTGAACTCTTGACATGTTTTATGTTTGTTTCGGCTT
ATGAGGATGGATGGTTGGCCTCTTATTGTTAATTTCTCG
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