CX672058

Overview
NameCX672058
Unique NameCX672058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5129 contig Csv1_Contig5129:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M1_YEAST (AP-1 complex subunit mu-1-I OS=Saccharomyces cerevisiae GN=APM1 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 9.120e-46
Identity = 95/172 (55.23%), Postives = 119/172 (69.19%), Query Frame = -3
Query:  403 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEE---------AAPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALPWVRYITMAG-EYELRL 885
            LM YRLST +KPLIW +  ++ HS SRIEI  KA++Q K +STATNVEI +PVP DA  P  + S GS +Y PE  A++WKI+SFPG KEY + AE  LPSI+  E          A   K P+++KF+IPYFT SGIQVRYLKI E K  Y++ PWVRYIT +G +Y +RL
Sbjct:  303 LMNYRLSTTIKPLIWCDVNVQVHSNSRIEIHCKAKAQIKRKSTATNVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKIRSFPGGKEYSMSAELGLPSISNNEDGNRTMPKSNAEILKGPVQIKFQIPYFTTSGIQVRYLKINEPKLQYKSYPWVRYITQSGDDYTIRL 474          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M_DICDI (AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 57/161 (35.40%), Postives = 91/161 (56.52%), Query Frame = -3
Query:  403 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 885
            LM YR +  +     V   +    R+R+E  V  +S F  +    NV++ +P P +     +  + G A+Y PE DA++W+I+ FPG+ E+ LRAE  L +    +     + PI ++F++  FT SG  VR+LK++EKS Y  + WVRY+T AG Y+ R+
Sbjct:  279 LMRYRTTEHINLPFKVIPIVREMGRTRLECSVTVKSNFSSKMFGANVKVIIPTPKNTAVCKIVVAAGKAKYMPEQDAIIWRIRRFPGDTEFTLRAEVELMASVNLDKKAWSRPPISMEFQVTMFTASGFSVRFLKVVEKSNYTPIKWVRYLTKAGTYQNRI 439          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M_CAEEL (AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  ++    V   +   SR+++E+ V  +S FK    A  +E+ +P P + +   +    G A+Y    +A+VWKIK   G KE  + AE  L S    E     + P+ + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  278 LMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2MA_DANRE (AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m1a PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.572e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  275 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFESKLNYSDHDVIKWVRYIGRSGIYETR 435          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_XENTR (AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_XENLA (AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_RAT (AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_PONAB (AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_MOUSE (AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_MACFA (AP-2 complex subunit mu-1 OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
The following BLAST results are available for this feature:
BLAST of CX672058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AP1M1_YEAST9.120e-4655.23AP-1 complex subunit mu-1-I OS=Saccharomyces cerev... [more]
AP2M_DICDI5.559e-2735.40AP-2 complex subunit mu OS=Dictyostelium discoideu... [more]
AP2M_CAEEL5.039e-2034.15AP-2 complex subunit mu OS=Caenorhabditis elegans ... [more]
AP2MA_DANRE5.572e-1933.54AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m... [more]
AP2M1_XENTR7.277e-1933.54AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN... [more]
AP2M1_XENLA7.277e-1933.54AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2... [more]
AP2M1_RAT7.277e-1933.54AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap... [more]
AP2M1_PONAB7.277e-1933.54AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 P... [more]
AP2M1_MOUSE7.277e-1933.54AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 P... [more]
AP2M1_MACFA7.277e-1933.54AP-2 complex subunit mu-1 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F11-K22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672058 ID=CX672058; Name=CX672058; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTGTCTCAAAATTTGTATTAAAATTTTATAATTTAAAATTGAG
ATTAGATACAAAAAGCAACAGCCATAATACAAAGAAAGCTACCTGTTGAT
CAATTTTACAACCAATGTTTATTAATTCCCACAAAAAATAATTGAAAAAC
TTTTGGAAGAACATTGCATCCCTACGAAATAAACTGGTATATTCAAAGGA
TTAGTAAAAGCACACAGCTTGAAGAAAAGAAAATCACCAAAGGACGTCAC
TACGGAAAGCAAAATTATGAGAAGAAACAACTTCCCAAATGAAAAAGGTC
TTTATCCTCTGTAGTTTCAAAGCCATATGATATATTTACGCACTTCAAAG
AGCCTGGAACGGACCTTTAGAGTTACATCTAATGAAGTATGGACCTTTAC
ATCAGTCTTAACTCGTATTCACCAGCCATCGTAATGTATCTCACCCATGG
AAGAGCCTGGTATCCACTTTTTTCAATTATCTTCAAATAACGAACCTGAA
TCCCTGAAACAGTAAAATATGGTATCTCAAACTTCACACGTATTGGAGCC
TTTCTCTCAGGTGCTGCTTCTTCTGCTGTTATACTAGGAAGACTAAACTC
TGCCCTCAACATATACTCCTTATTACCGGGAAAAGATTTGATTTTCCAGA
CCAAAGCATCATTCTCAGGAGCATATCTAGCAGATCCCATTGATGTCCGA
ACGTTGGGATTTGTTGCATCAGCTGGTACAGGCAACTCGATTTCAACATT
TGTTGCGGTGCTACGCTCCTTGAACTGGCTCCGTGCTTTTACCATTATTT
CAATTCGACTTCTAGAATGCCTTTCAATTTGAGCTTCCACCCAAATTAGA
GGTTTCACCTGAGTACTGAGTCTATACGTCATGAGAT
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