CX672058

Overview
NameCX672058
Unique NameCX672058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_HUMAN (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_CHICK (AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  272 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 432          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M1_BOVIN (AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  274 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2MB_DANRE (AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m1b PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 885
            LM YR +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G KE  + AE  L  +   +     + PI + FE+P F  SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct:  275 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMVGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 435          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M_SCHPO (AP-2 complex subunit mu OS=Schizosaccharomyces pombe GN=apm4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = -3
Query:  403 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG--YQALPWVRYITMAGEYELRL 885
            LM+YR    +     +   +E+ S+ +I   +  R+ +  +  ++++   +PVP +    N R + G A Y P  + + WKI  F G  E +  AE  L + T ++     K PI + F I  FT SG+ V+YL++ E S   Y+++ WVRY T AG  E+R+
Sbjct:  287 LMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADYPHK-LSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQI--WAKPPISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIKWVRYSTRAGTCEIRI 446          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP2M_YEAST (AP-2 complex subunit mu OS=Saccharomyces cerevisiae GN=APM4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSR-SRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRA-EFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK-SGYQALPWVRYITMAGEYELR 885
            LM Y +   +     V   +   +R + I+  +  +S F  + +A +V + +PVP    +  +  S G  ++ PE +A++W+   + G  E  L A   S    T        + PI ++FE+  F+ SG+ VRY  I  K S ++A+ W++YI+ AG YE+R
Sbjct:  328 LMKYHVRDNINLPFKVTPIVTHSTRDNEIDYRITLKSLFPGKLSAKDVVLHIPVPPSTVDCKISVSNGHCKFVPEENAMIWRFNKYNGLTENTLSAVTVSTSDTTQLNLQQWTRPPISLEFEVMMFSNSGLVVRYFTISGKDSKHRAVKWIKYISKAGSYEVR 490          
The following BLAST results are available for this feature:
BLAST of CX672058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AP2M1_HUMAN7.277e-1933.54AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
AP2M1_CHICK7.277e-1933.54AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M... [more]
AP2M1_BOVIN7.277e-1933.54AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=... [more]
AP2MB_DANRE9.504e-1933.54AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m... [more]
AP2M_SCHPO5.215e-1731.29AP-2 complex subunit mu OS=Schizosaccharomyces pom... [more]
AP2M_YEAST4.132e-1428.83AP-2 complex subunit mu OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F11-K22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672058 ID=CX672058; Name=CX672058; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTGTCTCAAAATTTGTATTAAAATTTTATAATTTAAAATTGAG
ATTAGATACAAAAAGCAACAGCCATAATACAAAGAAAGCTACCTGTTGAT
CAATTTTACAACCAATGTTTATTAATTCCCACAAAAAATAATTGAAAAAC
TTTTGGAAGAACATTGCATCCCTACGAAATAAACTGGTATATTCAAAGGA
TTAGTAAAAGCACACAGCTTGAAGAAAAGAAAATCACCAAAGGACGTCAC
TACGGAAAGCAAAATTATGAGAAGAAACAACTTCCCAAATGAAAAAGGTC
TTTATCCTCTGTAGTTTCAAAGCCATATGATATATTTACGCACTTCAAAG
AGCCTGGAACGGACCTTTAGAGTTACATCTAATGAAGTATGGACCTTTAC
ATCAGTCTTAACTCGTATTCACCAGCCATCGTAATGTATCTCACCCATGG
AAGAGCCTGGTATCCACTTTTTTCAATTATCTTCAAATAACGAACCTGAA
TCCCTGAAACAGTAAAATATGGTATCTCAAACTTCACACGTATTGGAGCC
TTTCTCTCAGGTGCTGCTTCTTCTGCTGTTATACTAGGAAGACTAAACTC
TGCCCTCAACATATACTCCTTATTACCGGGAAAAGATTTGATTTTCCAGA
CCAAAGCATCATTCTCAGGAGCATATCTAGCAGATCCCATTGATGTCCGA
ACGTTGGGATTTGTTGCATCAGCTGGTACAGGCAACTCGATTTCAACATT
TGTTGCGGTGCTACGCTCCTTGAACTGGCTCCGTGCTTTTACCATTATTT
CAATTCGACTTCTAGAATGCCTTTCAATTTGAGCTTCCACCCAAATTAGA
GGTTTCACCTGAGTACTGAGTCTATACGTCATGAGAT
back to top