EY664616

Overview
NameEY664616
Unique NameEY664616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig764 contig Csv1_Contig764:813..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 2.109e-97
Identity = 152/215 (70.70%), Postives = 178/215 (82.79%), Query Frame = 3
Query:   66 YRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMGKDHYVSDNGDVVYYQTDPQL 710
            Y+ L  +TR LR+ +P P+LAYP YL  RSPGK GSHF+P S LF PSERK + TST CW+ M   L+ LSFV GP+ +LK+YGVPY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT+AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD+V+Y+TDP L
Sbjct:  161 YKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375          

HSP 2 Score: 35.4242 bits (80), Expect = 2.109e-97
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1
Query:   16 HGHVENDESWHPLSEKI 66
            HGHVENDESW PL E++
Sbjct:  144 HGHVENDESWVPLPERV 160          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  123 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEATEAARPVLGKYYR 587
            L +P YL++   GK      +HFDP S +F   ER  V+ S +    + A+L G+   +   G   +  +YG+P     ++ D++TYLHH      LP Y   EW++LRG L+T+DRD+G+ N++ HD+  THV+HHLF  IPHYH  EA +A   VLG +Y+
Sbjct:  181 LGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT--HLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.818e-25
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 3
Query:  123 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 587
            L +P YL     G+       H+DP   ++   ER  +  S     A+   L  L+   G   ++ +YGVP  +   +L L+T+L H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +EAT+A +P+LG+YYR
Sbjct:  188 LGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT--HPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYR 345          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.818e-25
Identity = 66/171 (38.60%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   90 RFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 587
            R +   + F +L +P YL     G+       HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHY+ +EAT+A +P+LG YY+
Sbjct:  178 RIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.050e-25
Identity = 64/162 (39.51%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  123 LAYPFYLWSRS------PGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 587
            L +P Y W+ +      P     HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +E T+A +P+LG YY+
Sbjct:  188 LGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.178e-24
Identity = 62/160 (38.75%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  123 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 587
            + +P YL     G+      SH+ P + ++   ER  +  S V   ++   L  ++ + G + LL +YGVP  I   +L  +TYL H      LP Y   EW +L+G L T+DRDYG  N + HH   THV HHLF  +PHYH +EAT A +P+LG+YY+
Sbjct:  192 IGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFA--LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.976e-24
Identity = 70/198 (35.35%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  120 LLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMGKDHYVSDNGDVVYYQ 695
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y VPY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GDVV+++
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
BLAST of EY664616 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.303e-23
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  120 LLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMGKDHYVSDNGDVVYYQ 695
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GDVV+++
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
The following BLAST results are available for this feature:
BLAST of EY664616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_ARATH2.109e-9770.70Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL5.652e-2739.88Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FD6E2_SOYBN1.818e-2539.38Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.818e-2538.60Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU4.050e-2539.51Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.178e-2438.75Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORAP9.976e-2435.35Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS1.303e-2334.85Delta(12) fatty acid desaturase OS=Mortierella isa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664616 ID=EY664616; Name=EY664616; organism=Citrus sinensis; type=EST; length=896bp
CCAGCGTCCGCAAAACATGGGCATGTTGAGAATGATGAATCCTGGCACCC
GTTGTCTGAGAAAATTACAGGACTTTGGATAGTGCAACAAGATTTTTGAG
ATTCAAAATTCCTTTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTA
GGAGTCCGGGGAAGACTGGTTCTCACTTTGACCCTAACAGTGACCTGTTT
GTCCCAAGTGAGAGGAAGGATGTGATCACTTCAACAGTATGCTGGACGGC
CATGGCTGCTTTGCTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGT
TGCTTAAACTCTATGGCGTTCCATATTGGATTTTTGTCATGTGGCTGGAC
CTTGTGACTTACTTGCATCACCATGGGCATGAAGACAAACTTCCGTGGTA
TCGTGGAAAGGAATGGAGTTACTTAAGGGGAGGGCTCACAACACTTGATC
GTGACTATGGATGGTTCAATAACATCCACCACGATATTGGAACCCACGTC
ATACATCACCTCTTCCCTCAGATCCCGCATTACCACTTAATAGAAGCAAC
TGAGGCTGCTAGACCAGTTCTTGGAAAATATTACCGTGAGCCAAAGAAAT
CGGGACCGATACCTTTTAACCTTTTTGGAGATTTAATTAGAAGCATGGGT
AAAGACCACTATGTTAGTGACAATGGCGATGTTGTTTACTACCAGACCGA
CCCACAGCTTAACGGCTCTTCCAAATCANGGTAAAGCTGGCAAGCTTTCT
TATCTTGAACCGGCGTATTTAAATACCTTTAGCAATCCTTAAGCAGTCTT
ATAATCTACAATGATTTGACGATCCCCATTTTGGTACGGGATTCCNNTAT
TACAGATGAATGGGCATCTACAAGATGATTGCTTCTGCTTCTTCAA
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