EY664612

Overview
NameEY664612
Unique NameEY664612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 338.576 bits (867), Expect = 3.055e-92
Identity = 162/246 (65.85%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 335.88 bits (860), Expect = 1.980e-91
Identity = 161/246 (65.45%), Postives = 190/246 (77.24%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
[Close]
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.980e-91
Identity = 161/246 (65.45%), Postives = 191/246 (77.64%), Query Frame = 3 
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRAGGLTI 803
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLI  NDTI++DLET KIT+ IKFD G   MVTGG N+ R+G+I NRE+  GSF+ +H++DA G+ FATRL N+F IGKG       PR  G+ +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
The following BLAST results are available for this feature:
BLAST of EY664612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_BOVIN3.055e-9265.8540S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4X_RAT3.055e-9265.8540S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE3.055e-9265.8540S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU3.055e-9265.8540S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU3.055e-9265.8540S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN3.055e-9265.8540S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA3.055e-9265.8540S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE3.055e-9265.8540S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4_XENLA1.980e-9165.4540S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CHICK1.980e-9165.4540S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664612 ID=EY664612; Name=EY664612; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCAGGACTGTGACACGCCGTTGGCGAATCCAATCTCAGG
CTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCT
TAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTC
CCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATT
CTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCAT
TGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAG
ATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACG
AATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCA
TTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAG
TGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGG
ACTATTCGCTACCCAGACCCACTCATCAATGCCAATGATACCATCAAGCT
GGACCTGGAGACTAACAAGATCACCGAGNTCATCAAGTTTGATGTTGGAA
AATGTGTGATGGTGACTGGAGGGAGAAACATGAGACGTGTTGGAATCATT
TAGAACAGAGAAAAGCNTAAGGGTAGCTTTGAAACTATCCACATCCAGGA
TGCTCTTGGTCATGAGTTTGCCACTCGTCTTGGAAATGTGTTCACCATTG
GCAAGGGTACAAGCCATGGGTTTCTCTTTCCAAGGGCAGGGGGATTAACT
ATCCATCATTGAGGAGCCAGGAAGAAACAGCCCTGGCGACTAAGCAGCCG
CCCATGATGATAACTTCATGGCCTTGCCAAATGGTTTAAAAATTACTAAA
GAAATTTTGCATTGGAC
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