EY664612

Overview
NameEY664612
Unique NameEY664612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 54/201 (26.87%), Postives = 97/201 (48.26%), Query Frame = 3
Query:   78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS 677
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+    +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D   +  D+I +D E+  +    +++ G  V    G++  R+G + + +   GS
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 6.088e-16
Identity = 54/201 (26.87%), Postives = 96/201 (47.76%), Query Frame = 3
Query:   78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS 677
            +  H KRL+ P  W +++    F  K  +GPH     +PL+++LR+ L YA   +E    L + +VL++ K  +D+  P G  D+++  +  E +R+     GR  L +I  + A+ KL K+ +      G   +  +DG T I   D   +A D+I +  E  ++    +++ G  V    G +   VG +   +   GS
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 66/247 (26.72%), Postives = 115/247 (46.56%), Query Frame = 3
Query:   51 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFET-IHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRA 788
            +T TK+    +K LK     + W ++ L G+         HK    +PL++ LR+ LK     RE+  IL    V+VD KV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      I   D++ + +   +I + +KF  G  V +TGG ++  +  I + E    S E  +H+ +     F+T    VF +G    + F  P A
Sbjct:    2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG-SPKYTFSMPEA 231          
The following BLAST results are available for this feature:
BLAST of EY664612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HALLT7.191e-1726.8730S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_HALMA6.088e-1626.8730S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_PICTO3.946e-1526.7230S ribosomal protein S4e OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664612 ID=EY664612; Name=EY664612; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCAGGACTGTGACACGCCGTTGGCGAATCCAATCTCAGG
CTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCT
TAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTC
CCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATT
CTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCAT
TGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAG
ATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACG
AATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCA
TTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAG
TGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGG
ACTATTCGCTACCCAGACCCACTCATCAATGCCAATGATACCATCAAGCT
GGACCTGGAGACTAACAAGATCACCGAGNTCATCAAGTTTGATGTTGGAA
AATGTGTGATGGTGACTGGAGGGAGAAACATGAGACGTGTTGGAATCATT
TAGAACAGAGAAAAGCNTAAGGGTAGCTTTGAAACTATCCACATCCAGGA
TGCTCTTGGTCATGAGTTTGCCACTCGTCTTGGAAATGTGTTCACCATTG
GCAAGGGTACAAGCCATGGGTTTCTCTTTCCAAGGGCAGGGGGATTAACT
ATCCATCATTGAGGAGCCAGGAAGAAACAGCCCTGGCGACTAAGCAGCCG
CCCATGATGATAACTTCATGGCCTTGCCAAATGGTTTAAAAATTACTAAA
GAAATTTTGCATTGGAC
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