EY664612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17 Identity = 54/201 (26.87%), Postives = 97/201 (48.26%), Query Frame = 3 Query: 78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS 677 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+ +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + +DG + D + D+I +D E+ + +++ G V G++ R+G + + + GS Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 6.088e-16 Identity = 54/201 (26.87%), Postives = 96/201 (47.76%), Query Frame = 3 Query: 78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS 677 + H KRL+ P W +++ F K +GPH +PL+++LR+ L YA +E L + +VL++ K +D+ P G D+++ + E +R+ GR L +I + A+ KL K+ + G + +DG T I D +A D+I + E ++ +++ G V G + VG + + GS Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15 Identity = 66/247 (26.72%), Postives = 115/247 (46.56%), Query Frame = 3 Query: 51 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFET-IHIQDALGHEFATRLGNVFTIGKGTSHGFLFPRA 788 +T TK+ +K LK + W ++ L G+ HK +PL++ LR+ LK RE+ IL V+VD KV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ I D++ + + +I + +KF G V +TGG ++ + I + E S E +H+ + F+T VF +G + F P A Sbjct: 2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG-SPKYTFSMPEA 231 The following BLAST results are available for this feature:
BLAST of EY664612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY664612 ID=EY664612; Name=EY664612; organism=Citrus sinensis; type=EST; length=917bpback to top |