EY664612

Overview
NameEY664612
Unique NameEY664612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 81/232 (34.91%), Postives = 126/232 (54.31%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVG-II*NREKXKGSFETIHIQDALGHEFATRLGNVFTIG 752
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I ++EA  K  ++R+ +  +     +N +DG     +I   D    +  T+ + +   +I E + F+ G  V VT G+N+ R G I+  +    G  + + I+D  G  F T     F +G
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSY-TVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVG 234          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 74/236 (31.36%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + +    D++ + L    +   ++F+ GK   +TGG+++     +   EK     + + +++  G +F T    VF +G+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ 237          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 74/236 (31.36%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + +    D++ + L    +   ++F+ GK   +TGG+++     +   EK     + + +++  G +F T    VF +G+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ 237          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.815e-29
Identity = 76/236 (32.20%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + +    D++ + +    I   + F  GK   VTGG+++     I   E      + + +++  G +F T    VF +G+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.190e-29
Identity = 75/236 (31.78%), Postives = 123/236 (52.12%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + +    D++ + +    I   + F  GK   VTGG+++     I   E      + + +++  G +F T    VF +G+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.070e-28
Identity = 74/236 (31.36%), Postives = 123/236 (52.12%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + +    D++ + +    I   + F  GK   +TGG+++     I   E      + + +++  G +F T    VF +G+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.397e-28
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 3
Query:   75 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLINANDT------IKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETI-HIQDALGHEFATRLGNVFTIG 752
            G  +HLK +NAP++W + +    +  K S GPH     LPL++++R+ L YA T +E   ++ + +  +D +VR D  +P G MDV+ I   N+ +R++        L  I  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I + +    G   +V+GGRN+ RVG I +  K    + +I  ++D  G++F T L  +F IG
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIG 239          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.383e-28
Identity = 78/243 (32.10%), Postives = 130/243 (53.50%), Query Frame = 3
Query:   75 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LINANDTIKLDL------ETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFE-TIHIQDALGHEFATRLGNVFTIGK 755
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MDVV IP+T + +R++ +   R  +  I +EEA+ K+C++++  + + G   I  +DG+   +   DP      + +  D++ L+L      E+ K+ + I F+ G  V    GR+   VG +   +  +G  E  I +++  G +F T  G +  IGK
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK 249          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.933e-28
Identity = 72/236 (30.51%), Postives = 121/236 (51.27%), Query Frame = 3
Query:   72 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + +    D++ + +    I   + F  GK   +TGG+++     I   E      + + +++  G +F T    VF +G+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.545e-27
Identity = 76/229 (33.19%), Postives = 119/229 (51.97%), Query Frame = 3
Query:   75 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATR--LGNVFTIGK 755
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+LI+R+ LK A T RE   I+  + +LVD K R D  +  G MDV+SIP+   N+R++ D     RL  I   E+K KL KV   +  + G   + ++DGR        +   D++ ++L +  + + ++FD G  V+VT GR   R+G      + +G    I ++D    E + R    N+  +GK
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIG------RVEGIGTIIEMRDLENPELSYRGVKENLIVVGK 227          
The following BLAST results are available for this feature:
BLAST of EY664612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_PYRFU1.264e-2934.9130S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METVS1.264e-2931.3630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.264e-2931.3630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METM52.815e-2932.2030S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM78.190e-2931.7830S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM61.070e-2831.3630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_DESK11.397e-2832.7730S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_METKA2.383e-2832.1030S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_METMP6.933e-2830.5130S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_KORCO1.545e-2733.1930S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664612 ID=EY664612; Name=EY664612; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCAGGACTGTGACACGCCGTTGGCGAATCCAATCTCAGG
CTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCT
TAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTC
CCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATT
CTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCAT
TGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAG
ATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACG
AATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCA
TTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAG
TGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGG
ACTATTCGCTACCCAGACCCACTCATCAATGCCAATGATACCATCAAGCT
GGACCTGGAGACTAACAAGATCACCGAGNTCATCAAGTTTGATGTTGGAA
AATGTGTGATGGTGACTGGAGGGAGAAACATGAGACGTGTTGGAATCATT
TAGAACAGAGAAAAGCNTAAGGGTAGCTTTGAAACTATCCACATCCAGGA
TGCTCTTGGTCATGAGTTTGCCACTCGTCTTGGAAATGTGTTCACCATTG
GCAAGGGTACAAGCCATGGGTTTCTCTTTCCAAGGGCAGGGGGATTAACT
ATCCATCATTGAGGAGCCAGGAAGAAACAGCCCTGGCGACTAAGCAGCCG
CCCATGATGATAACTTCATGGCCTTGCCAAATGGTTTAAAAATTACTAAA
GAAATTTTGCATTGGAC
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