EY664612

Overview
NameEY664612
Unique NameEY664612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.400e-20
Identity = 59/230 (25.65%), Postives = 109/230 (47.39%), Query Frame = 3
Query:   66 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTIGK 755
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ I++     A   +E   ++    + V+ K      +P   MD +S P  N+++R+L    G+  ++ I   E   K+CKV  +         I T D R ++     I   D++ +    ++I   +KF+VG   ++T G+++  + +I    K K   + IH++   G +   +  ++  IG+
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGE 230          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.400e-20
Identity = 66/186 (35.48%), Postives = 91/186 (48.92%), Query Frame = 3
Query:   87 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNM 632
            HL+R  AP  W +  K GG +  +PS GPH     LPL LI+R+ LKYA T  E   I+ + +V VD  VR D  +P G MDV+ I  T E +R++ D    + L  I  EEA  KL +V      + G   ++ +DGR   T       I   D++  DL    I   I   +G   +V  G N+
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNV 188          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.548e-19
Identity = 71/226 (31.42%), Postives = 107/226 (47.35%), Query Frame = 3
Query:   78 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSFETIHIQDALGHEFATRLGNVFTI 749
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVD +   D  +P G  DV++IP+ NE +R+L D +G+  L  I  EEA  K  K +R V      I Y  T DGRT    D     +  +  ++   KI E I  +  +   +  G++  R+G+I    K    +  I   +  G    T L N+  +
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.683e-19
Identity = 70/231 (30.30%), Postives = 104/231 (45.02%), Query Frame = 3
Query:   93 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKG-SFETIHIQDALGHEFATRLGNVFTIGKGTSHGFLFP 782
            KRL   +   + +    + P P+ G H   + + L+ I+R+ LK +   RE   IL    V VD K   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D      D   + +   KI+E IK   G    +T G ++ + G I   E  +G S   +H Q+     F+T   +VF IG       L P
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSP 230          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.003e-18
Identity = 68/234 (29.06%), Postives = 108/234 (46.15%), Query Frame = 3
Query:   87 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS------FETIHIQDALGHEFATRLGNVFTIGK 755
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVD +VR D  YP G MDV++IP  +   R++ D     +   I +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+N    GII   ++ + S      +  + I+   G E+ T L N   IG+
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKN---AGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVIGE 233          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.712e-18
Identity = 64/228 (28.07%), Postives = 109/228 (47.81%), Query Frame = 3
Query:   87 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDL---ETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGSF--ETIHIQDALGHEFATRLGNVFTIGK 755
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+ +         G  D+VSIPK+ +++R+L D KGR     I ++ A  +L K+ +    + G   +N  DG  +   D    + D+I L L   + N+I +   F  G   M+ GG++   VG I       GS     I   ++ G  F T    V  +G+
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGR 229          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.980e-18
Identity = 66/221 (29.86%), Postives = 103/221 (46.61%), Query Frame = 3
Query:   93 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NRE-KXKGSFETIHIQDALGHEFATRLGNVFTIG 752
            KRL  P+   + +    + P P  G HK+   + L+ I+R+ L+ +   RE   IL    V VD KV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I+  D +   L   KITE IK   G    +TGG ++   G I   E K   S   +H  +     F T   +VF IG
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVIG 220          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.216e-17
Identity = 58/212 (27.36%), Postives = 96/212 (45.28%), Query Frame = 3
Query:   78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS-FETIHIQDALG 710
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G  V    G++   +G I       GS   T+ + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.216e-17
Identity = 58/212 (27.36%), Postives = 96/212 (45.28%), Query Frame = 3
Query:   78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS-FETIHIQDALG 710
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G  V    G++   +G I       GS   T+ + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of EY664612 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 55/201 (27.36%), Postives = 97/201 (48.26%), Query Frame = 3
Query:   78 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLINANDTIKLDLETNKITEXIKFDVGKCVMVTGGRNMRRVGII*NREKXKGS 677
            +  H KRL  PK W +++   A+  K ++GPH   E +PL+++LR+ L Y  + +E    L Q  +L++    +D+  P G  D+++  +  E +R+  D  GR  L  I ++ A  KL K+        G   ++ +DG T+   D    + ND+I +  +  +I     ++ G  V    G +  R+G I   +   GS
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTIDEIQVTPGS 200          
The following BLAST results are available for this feature:
BLAST of EY664612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_BIGNA1.400e-2025.6540S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_PYRAE1.400e-2035.4830S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_NANEQ1.548e-1931.4230S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_THEAC7.683e-1930.3030S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_METS51.003e-1829.0630S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_METHJ1.712e-1828.0730S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_THEVO4.980e-1829.8630S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_HALSA4.216e-1727.3630S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS34.216e-1727.3630S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_NATPD7.191e-1727.3630S ribosomal protein S4e OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664612 ID=EY664612; Name=EY664612; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCAGGACTGTGACACGCCGTTGGCGAATCCAATCTCAGG
CTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCT
TAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTC
CCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATT
CTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCAT
TGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAG
ATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACG
AATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCA
TTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAG
TGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGG
ACTATTCGCTACCCAGACCCACTCATCAATGCCAATGATACCATCAAGCT
GGACCTGGAGACTAACAAGATCACCGAGNTCATCAAGTTTGATGTTGGAA
AATGTGTGATGGTGACTGGAGGGAGAAACATGAGACGTGTTGGAATCATT
TAGAACAGAGAAAAGCNTAAGGGTAGCTTTGAAACTATCCACATCCAGGA
TGCTCTTGGTCATGAGTTTGCCACTCGTCTTGGAAATGTGTTCACCATTG
GCAAGGGTACAAGCCATGGGTTTCTCTTTCCAAGGGCAGGGGGATTAACT
ATCCATCATTGAGGAGCCAGGAAGAAACAGCCCTGGCGACTAAGCAGCCG
CCCATGATGATAACTTCATGGCCTTGCCAAATGGTTTAAAAATTACTAAA
GAAATTTTGCATTGGAC
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