CX672024

Overview
NameCX672024
Unique NameCX672024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.412e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.412e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_ECOL5 (Malate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.412e-45
Identity = 99/181 (54.70%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GVIECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVIECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_ECO7I (Malate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.412e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.412e-45
Identity = 90/181 (49.72%), Postives = 124/181 (68.51%), Query Frame = -1 
Query:  290 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 832
            FKK G Y+P ++ GVT LD+VRAN FVAE+  LDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  T+ P+F++ + LG+ GIE+   +G ++ +E   + +A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANAFVAELKDLDPARVNVPVIGGHAGKTIIPLISQCTPKVEFPQDQLTTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKVSPFEEKMIAEAIPELKASIKKGEEFVK 335
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.150e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.150e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGKEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_SHIF8 (Malate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.150e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGKEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_SHIBS (Malate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.150e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX672024 vs. ExPASy Swiss-Prot
Match: MDH_SHIB3 (Malate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdh PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.150e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  287 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 829
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
The following BLAST results are available for this feature:
BLAST of CX672024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_ECOSM2.412e-4554.14Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLU2.412e-4554.14Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_ECOL52.412e-4554.70Malate dehydrogenase OS=Escherichia coli O6:K15:H3... [more]
MDH_ECO7I2.412e-4554.14Malate dehydrogenase OS=Escherichia coli O7:K1 (st... [more]
MDHM_BOVIN2.412e-4549.72Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDH_SHISS3.150e-4554.14Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIFL3.150e-4554.14Malate dehydrogenase OS=Shigella flexneri GN=mdh P... [more]
MDH_SHIF83.150e-4554.14Malate dehydrogenase OS=Shigella flexneri serotype... [more]
MDH_SHIBS3.150e-4554.14Malate dehydrogenase OS=Shigella boydii serotype 4... [more]
MDH_SHIB33.150e-4554.14Malate dehydrogenase OS=Shigella boydii serotype 1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14E06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E06-I12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672024 ID=CX672024; Name=CX672024; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTGAAGTATGAACTCTGATTTTGAATTGATTAAAATGATAAAACA
GGCGGCAGTTCGTCATCTACATATTCTTTATCCCTTCATTACAAGAATAT
CAAAAGAACCAAACCAACCCCACTAAGATGAATCTTTTGCTTCTTCTTTG
TAACTAACTTAATTCAATCTGATTATGGAAAAACGAAAACCCTACCTCTT
ATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACAACAAAAGCACA
ACCATTATCATTAGTCACCATGTGATTGGTTACTCATTTCCTGACAAAAC
TGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTGCCTTCTCCAAA
CCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAAATTTCCTCAAT
TCCAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGGGAGTTCAGTCA
CCGTAGAAGCCACGTATGCACACTCAATAACACCGGCATCCCCCCTCAAG
CCTCGGAGACAAGCATCGGCAAACTTGGCAGCAGCATATGCCATCGATAG
AGTGGCCGAACCAGCTCCAGTTTTTGCCTCAACTACTTCTGTACCACCAT
TCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGGTGAGAGAGCAT
GATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACCCCTGCATGACC
TCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACCCAAGACCTCAG
CCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGACTCCCAAAAGT
CGCTTTGGATCATAAGTGCCAACTTTCTTGAA
back to top