CX672017

Overview
NameCX672017
Unique NameCX672017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:317..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.920e-55
Identity = 115/209 (55.02%), Postives = 149/209 (71.29%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTAR+VTI KD+TTI+A+  ++  ++ R  Q+KK++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +GA+IV+ +L AP   IA NA           K    + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LEMLGTARRVTINKDTTTIVAEG-NETAVKGRCEQIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLAADLQKWANSNLSGEELIGANIVEASLAAPLMRIAENAGANGAVVAENVKSRPISDGYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.507e-55
Identity = 112/209 (53.59%), Postives = 154/209 (73.68%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTAR++TI KD+TTI+A+  ++  ++AR  Q++K++ ET+S YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    ++    +E +GA+IV +AL AP   IA NA           +   ++ G+NA +++Y +ML AG+IDPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 IEMLGTARRITINKDTTTIVAEG-NEVAVKARCEQIRKQMDETESTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALTEWANQNLSGEELIGANIVAQALDAPLKRIAENAGANGSVVAENVRHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.507e-55
Identity = 117/209 (55.98%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++QLG A KVT+ KDSTTI+  A SKD I  R+ Q+KK++A+T S +D EKL ER+AKL+GGVAVIKVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +     K +  D + G +IV KAL AP   IA NA           +  +   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  312 IDQLGKAGKVTVTKDSTTIVEGAGSKDAISERVDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQG-NVKGDSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.507e-55
Identity = 114/209 (54.55%), Postives = 149/209 (71.29%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTAR+VTI KD+TTI+A+  ++  ++ R  Q+KK++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +G++IV+ +L AP   IA NA           K    + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LEMLGTARRVTINKDTTTIVAEG-NETAVKGRCEQIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLASDLQKWANSNLSGEELIGSNIVEASLAAPLMRIAENAGANGAVVAENVKSRPISDGYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_PROM2 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL2 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.507e-55
Identity = 114/209 (54.55%), Postives = 150/209 (71.77%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGT R++TI K++TTI+A+  ++  ++AR  Q+KK++ ETDS YD EKL ER+AKL+GGVAVIKVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HLS  +    DK    +E +GA+IV+ +L AP   IA NA           K   +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LDMLGTGRRITINKETTTIVAEG-NEQAVKARCDQIKKQMDETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLKGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.275e-55
Identity = 115/209 (55.02%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++  G+AR+VT+ KD TTI+A+  ++  ++AR  Q+++++ ETDS YD EKL ER+AKLSGGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL   V          DE +GA +V +AL AP   IA NA           K+  +T GY+A  D Y +M +AG++DPAKVTR ALQNAAS+A MVLTT+AI
Sbjct:  313 LDSFGSARRVTVTKDHTTIVAEG-NEAAVKARCEQIRRQIEETDSTYDKEKLQERLAKLSGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLMPAVTEWAQANLSGDELVGAMLVARALGAPLRRIAENAGQNGSIVLERVKEKPFTVGYDAQNDAYVDMFEAGIVDPAKVTRSALQNAASIASMVLTTEAI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.275e-55
Identity = 117/212 (55.19%), Postives = 152/212 (71.70%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE---DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGT+R+VTI KD++TI+A+  ++  + AR  Q+KK++ ETDS YD EKL ER+AKLSGGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+   PA++D        +E +GA+IV+ AL +P   IA NA           K      GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LDMLGTSRRVTINKDTSTIVAEG-NEVAVNARCEQIKKQMDETDSTYDKEKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PALEDWSSTNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.277e-55
Identity = 114/209 (54.55%), Postives = 146/209 (69.86%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTAR+VTI KD+TTI+A+  ++  +  R  Q+KK++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L H++  +          +E +GA+IV  AL AP   IA NA           K   +  GYNA   +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LEMLGTARRVTINKDTTTIVAEG-NEVAVSTRCEQIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHMAPALEEWAASNLSGEELIGANIVASALTAPLMRIAENAGVNGAVVAENVKSKSFNEGYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.586e-55
Identity = 114/209 (54.55%), Postives = 147/209 (70.33%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGT R++TI K++TTI+A+   K  + AR  Q+KK++ ETDS YD EKL ER+AKL+GGVAVIKVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    DK    +E +GA+IV+ +L +P   IA NA           K   +  G+NA T  Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LEMLGTGRRITINKETTTIVAEGNEK-AVTARCDQIKKQMDETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.586e-55
Identity = 114/209 (54.55%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGT+R+VTI KD++TI+A+  ++  + AR  Q+KK++ ETDS YD EKL ER+AKLSGGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA+IV+ AL +P   IA NA           K      GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  313 LDMLGTSRRVTINKDTSTIVAEG-NEVAVNARCEQIKKQMDETDSTYDKEKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALGDWSSSNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
The following BLAST results are available for this feature:
BLAST of CX672017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_PROM31.920e-5555.0260 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_SYNR32.507e-5553.5960 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_LACGA2.507e-5555.9860 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH602_PROMM2.507e-5554.5560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM22.507e-5554.5560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_SYNJA3.275e-5555.0260 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH602_PROM13.275e-5555.1960 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_SYNS34.277e-5554.5560 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_PROMP5.586e-5554.5560 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH601_PROMT5.586e-5554.5560 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E02-I4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672017 ID=CX672017; Name=CX672017; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTACAAAAAAGACACGATTTTATATCAATTAAGTAAAA
CTTGTCTTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAAAC
TCCTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGG
CGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCT
GAGTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACAT
CTTGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATA
CTTGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCT
TCTCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGAT
GCAGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATC
TGCATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAA
CCAGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAA
GTTGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGT
TTCTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAG
CAATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCC
AACTCCTTTTTCAGCTGTGCAATTCTAGCTTGTATTTCATCCTTTGATGC
AGCATCAGCAATAATGGTAGTGGAGTCCTTTCTGATGGTCACCTTTCTAG
CTGTACCTAGCTGCTCAACT
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