CX672017

Overview
NameCX672017
Unique NameCX672017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:317..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 7.549e-52
Identity = 111/209 (53.11%), Postives = 145/209 (69.38%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD TT++     ++ I AR+ Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 LDMLGTANKVEVTKDHTTVVDGNGDENNIDARVGQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.549e-52
Identity = 111/209 (53.11%), Postives = 145/209 (69.38%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD TT++     ++ I AR+ Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 LDMLGTANKVEVTKDHTTVVDGNGDENNIDARVGQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 7.549e-52
Identity = 112/209 (53.59%), Postives = 147/209 (70.33%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            VEQLG AR+V ++K++T I+  A    EIQ RIA +K ++ ET S +D EKL ER+AKL+GGVAVI+VGAATETE++++KLRIEDA  AT AA+EEGIV GGG ALV++   V  + D +   DE+ G  I+ +AL  P   IA NA           K SE   G++A  +KY NM++AG++DPAKVTR ALQNAASVA MVLTT+++
Sbjct:  312 VEQLGRARQVKVQKENTIIVDGAGDPKEIQKRIASIKSQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALAATKAAVEEGIVAGGGTALVNVIPKVAKVLDTV-SGDEKTGVQIILRALEEPVRQIAENAGLEGSVIVEKVKASEPGIGFDAYNEKYVNMIEAGIVDPAKVTRSALQNAASVASMVLTTESV 519          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAAR (60 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.859e-52
Identity = 110/209 (52.63%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 IDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEVGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_PHATR (60 kDa chaperonin, chloroplastic OS=Phaeodactylum tricornutum GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.859e-52
Identity = 107/207 (51.69%), Postives = 146/207 (70.53%), Query Frame = -2
Query:  193 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH-VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 810
            LG AR++ + KDSTTI++D  + +EI  R  QL+K++   D+ Y+ EKL +RIAKLSGG+AVI+VGA TETE++D+KLR+EDA NAT AA+EEGIVPGGGA L HLS++ V   K+ L++ DE +GA I+ +A++AP   IA NA           +  E+  GYNA  + + NM   G++DPAKVTR  LQNA S+A M+LTT+ I
Sbjct:  317 LGQARRIIVNKDSTTIVSDGQTLNEINIRCEQLRKQVNIADTGYEKEKLQDRIAKLSGGIAVIRVGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATLTHLSENLVTWAKNNLKE-DELIGAMIISRAILAPLRRIAENAGINGPVIIEKVQQQEFEIGYNAAKNTFGNMYTEGIVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_THAPS (60 kDa chaperonin, chloroplastic OS=Thalassiosira pseudonana GN=groL PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.288e-51
Identity = 105/209 (50.24%), Postives = 142/209 (67.94%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            V  LG AR++ + KD+TTI+ D    + I+AR  QL+K++   ++ Y+ EKL +RIAKLSGG+AVI+VGA TETE++D+KLR+EDA NAT AA+EEGIVPGGGA L HLS+++          DE +GA I+ +A+VAP   IA NA           ++ E+  GYNA  + + NM   GV+DPAKVTR  LQNA S+A M+LTT+ I
Sbjct:  314 VNLLGQARRIIVNKDTTTIVGDGLEIENIKARCEQLRKQVNIAETSYEKEKLQDRIAKLSGGIAVIRVGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATLAHLSENLVTWSKTNLKEDELIGALIISRAIVAPLKRIAENAGINGPVVIGKVQEQEFEIGYNAAKNLFGNMYDEGVVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAAT (60 kDa chaperonin OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=groL PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.288e-51
Identity = 110/209 (52.63%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 IDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAAE (60 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groL PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.288e-51
Identity = 110/209 (52.63%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 IDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAAC (60 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groL PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.288e-51
Identity = 110/209 (52.63%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 IDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH60_STAA8 (60 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=groL PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.288e-51
Identity = 110/209 (52.63%), Postives = 148/209 (70.81%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            ++ LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  312 IDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CX672017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STAES7.549e-5253.1160 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ7.549e-5253.1160 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_CLOTH7.549e-5253.5960 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH60_STAAR9.859e-5252.6360 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_PHATR9.859e-5251.6960 kDa chaperonin, chloroplastic OS=Phaeodactylum ... [more]
CH60_THAPS1.288e-5150.2460 kDa chaperonin, chloroplastic OS=Thalassiosira ... [more]
CH60_STAAT1.288e-5152.6360 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAE1.288e-5152.6360 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAC1.288e-5152.6360 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAA81.288e-5152.6360 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E02-I4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672017 ID=CX672017; Name=CX672017; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTACAAAAAAGACACGATTTTATATCAATTAAGTAAAA
CTTGTCTTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAAAC
TCCTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGG
CGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCT
GAGTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACAT
CTTGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATA
CTTGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCT
TCTCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGAT
GCAGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATC
TGCATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAA
CCAGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAA
GTTGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGT
TTCTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAG
CAATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCC
AACTCCTTTTTCAGCTGTGCAATTCTAGCTTGTATTTCATCCTTTGATGC
AGCATCAGCAATAATGGTAGTGGAGTCCTTTCTGATGGTCACCTTTCTAG
CTGTACCTAGCTGCTCAACT
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