CX672016

Overview
NameCX672016
Unique NameCX672016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672016_ssr724 microsatellite CX672016_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:114..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 246.514 bits (628), Expect = 1.538e-64
Identity = 122/235 (51.91%), Postives = 180/235 (76.60%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +K I+F   SR +++AGI+ L+DAV +TLGP+GRNV+L+ ++G+P++VNDG+T+A+ IEL++P ENAGA LI+EVASKT + AGDGTTTA+++A+ +++ GL +V +GANPV+L+RGI+K    LV+E+E  A+P+EG   I  VAT+S+GND  +G MIADA+DKV  DGV+                GM+IDRGYISP F+T+ ++ +VEF+N  +L+TD+KISAI +++P+L
Sbjct:    2 SKLISFKDESRRSLEAGINALADAVRITLGPKGRNVLLEKQYGAPQIVNDGITVAKEIELSNPEENAGAKLIQEVASKTKEIAGDGTTTATIIAQALVREGLRNVAAGANPVALRRGIEKVTTFLVQEIEAVAKPVEG-SAIAQVATVSSGNDPEVGAMIADAMDKVTKDGVITVEESKSLNTELEVVEGMQIDRGYISPYFITDSDRQLVEFDNPLILITDKKISAIAELVPVL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.538e-64
Identity = 123/235 (52.34%), Postives = 173/235 (73.62%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK I F + +R A++ G+D L++AV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G +LIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK V  LV+++ + ARP+E    I  VA ISAGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP FVT+ E++    EN  +L+TD+KI+ ++D++P+L
Sbjct:    2 AKSIIFSEEARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIAEAMDKVGREGVISLEEGKSMTTELEVTEGMRFDKGYISPYFVTDTERMEAVLENPYILITDKKITLVQDLVPVL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.538e-64
Identity = 124/235 (52.77%), Postives = 172/235 (73.19%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK + FD+ +R A++ GI KL++AV +TLGPRGRNVVL++ FG+P + NDGVTIA+ +EL DP+EN GA L+REVASKTND AGDGTTTA VLA+ I++ G+ +V +GANP+ +KRGI+K V  +VE L+ +ARP+E +D I  VA+ISA ND  IG ++ADA++KVG DGV+                GM+ DRGYISP  VT+ E++    E   +L+TD+KI+A+ D++P+L
Sbjct:    2 AKQVVFDREAREALEKGITKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVREVASKTNDVAGDGTTTACVLAQAIVREGMKNVAAGANPMFMKRGIEKAVAAVVENLKAQARPVETKDSISQVASISA-NDPQIGALVADAMEKVGKDGVITVEESKGMETAVDVVEGMQFDRGYISPYMVTDNERMEAVLEEPYILITDKKITAVADLVPVL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.009e-64
Identity = 122/235 (51.91%), Postives = 173/235 (73.62%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK I F + +R A++ G+D L++AV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G +LIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK V  LV+++ + ARP+E    I  VA ISAGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP FVT+ E++    EN  +L+TD+KI+ ++D++P+L
Sbjct:    2 AKSIIFSEEARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIAEAMDKVGREGVISLEEGKSMTTELEVTEGMRFDKGYISPYFVTDTERMEAVLENPYILITDKKITLVQDLVPVL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_METI4 (60 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.624e-64
Identity = 125/236 (52.97%), Postives = 170/236 (72.03%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AK + FD+ +R A+  G++KLS AV  TLGP GRNV+LD+ FGSP +  DGVT+A+ +EL DP EN GA L++EVASKT+D AGDGTTTA+VLA  I K GL +VT+GANP+ LKRG+DK V  +V++L++ +  ++G+++IK VAT+SA  D  IG +IADA+DKVG DG +                GM+ DRGYISP FVTN E+L    ENA +L+ ++KIS +KD++PLL
Sbjct:    2 AAKQLIFDESARHALLRGVEKLSKAVKCTLGPAGRNVILDKKFGSPTITKDGVTVAKEVELEDPWENMGAQLVKEVASKTSDVAGDGTTTATVLAESIYKEGLKNVTAGANPMDLKRGVDKAVQAVVKQLKEISHIVKGKEEIKQVATVSANWDTSIGEIIADALDKVGKDGTVTVEEAKHIETTLEVVEGMQFDRGYISPYFVTNAEELEAVLENAYILIHEKKISNLKDLLPLL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.427e-64
Identity = 124/235 (52.77%), Postives = 177/235 (75.32%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK +AF + SR +++ GI+ L+DAV +TLGP+GRNVVL++ +G+P++VNDGVTIA+ IEL D  EN GA L+REVA+KTND  GDGTTTA+VLA+ +I+ GL +V +G NP++LKRG++K +  +V+ + + A+P+EG D I  VAT+SAGND  +G MI++A+ KVG DGV+                GM+ DRGYISP FVT+PE++IV+  NA +L+TD+KI++I+D+IP L
Sbjct:    2 AKLVAFHEESRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEG-DMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.427e-64
Identity = 124/235 (52.77%), Postives = 177/235 (75.32%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK +AF + SR +++ GI+ L+DAV +TLGP+GRNVVL++ +G+P++VNDGVTIA+ IEL D  EN GA L+REVA+KTND  GDGTTTA+VLA+ +I+ GL +V +G NP++LKRG++K +  +V+ + + A+P+EG D I  VAT+SAGND  +G MI++A+ KVG DGV+                GM+ DRGYISP FVT+PE++IV+  NA +L+TD+KI++I+D+IP L
Sbjct:    2 AKLVAFHEESRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEG-DMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.845e-64
Identity = 123/236 (52.12%), Postives = 171/236 (72.46%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AK I F+  +R A++ G+DKL+DAV +TLGP+GRNV++++ FG+P V  DGVT+A+ IEL D +EN GA +++EVASKT+D AGDGTTTA+VLA+ I+  GL SVT+GANP+ LKRGIDK V  +V EL K ++ ++ ++ I  VATISA  D  IG +IADA +KVG DGV+                GM+ DRGY+SP FVTNP+ +    E+A +L+ D+KISA+KD++P+L
Sbjct:    2 AAKQITFNADARMALKRGVDKLADAVKVTLGPKGRNVIIEKKFGAPTVTKDGVTVAKEIELEDKLENVGAQMVKEVASKTSDVAGDGTTTATVLAQAILTAGLKSVTAGANPMDLKRGIDKAVEVVVAELRKMSQEVQDKNRIAQVATISANGDKAIGQLIADAFEKVGKDGVITVEEAKGTETTLEVVEGMQFDRGYLSPYFVTNPDTMEAVLEDAYILIHDKKISAMKDLLPIL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.302e-63
Identity = 123/236 (52.12%), Postives = 175/236 (74.15%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDD-IKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK+I FD  +R  ++ G+D L++AV +TLGP+GRNVVL + FG P+V  DGV++A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP+ LKRGIDK V  +V +L+K++R + G ++ IK VA+ISA ND+ IG +I+ A DKVG +GV+                GM+ DRGY SP FVTN +K+I EF+N  +L++D+KIS++KD++P+L
Sbjct:    2 AKNIQFDIEARDKLKKGVDALANAVKVTLGPKGRNVVLQKSFGGPQVTKDGVSVAKEIELEDPIENLGAQMVKEVASKTNDIAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAVVNDLKKQSREVGGSNEKIKQVASISANNDEAIGELISVAFDKVGKEGVITVEEAKGIETTVDVVEGMQFDRGYQSPYFVTNSDKMITEFDNPYILLSDKKISSMKDLLPIL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.302e-63
Identity = 123/236 (52.12%), Postives = 169/236 (71.61%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL+DP EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V+EL   +R I G+ +I  V TISA ND +IG +IADA+DKVG DGV+                GM+ DRGY+SP FVTN E +  E E+  +L+ D+KIS +K+++P+L
Sbjct:    2 TAKDILFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELSDPFENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVQELRNISRSISGKKEIAQVGTISANNDPVIGDLIADAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNSETMDAELEDPLILIYDKKISNMKELLPIL 237          
The following BLAST results are available for this feature:
BLAST of CX672016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNY31.538e-6451.9160 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_SYNJA1.538e-6452.3460 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH602_MOOTA1.538e-6452.7760 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH601_SYNJB2.009e-6451.9160 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH60_METI42.624e-6452.9760 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]
CH602_THEVL3.427e-6452.7760 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB3.427e-6452.7760 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_RHOMR5.845e-6452.1260 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_SULMW1.302e-6352.1260 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_PELPB1.302e-6352.1260 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E02-I4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672016 ID=CX672016; Name=CX672016; organism=Citrus sinensis; type=EST; length=900bp
CTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTGTT
GAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAGTT
TGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGTGC
TGGTCACGGATCAAAAAATTTCTGCAATAAAGGATATAATTCCCTTGTTA
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