CX672016

Overview
NameCX672016
Unique NameCX672016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672016_ssr724 microsatellite CX672016_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:114..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.440e-62
Identity = 120/236 (50.85%), Postives = 171/236 (72.46%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK+I FD  +R  ++ G+D L++AV +TLGP+GRNV++ + FG P V  DGVT+A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I+K GL +V +GANP+ LKRGIDK V  +V +L K+A+ +    + IK +A+ISA ND++IG +IA+A  KVG +GV+                GM+ DRGY+SP FVTNPEK+  E EN  +L+ D+K+S++K+++P+L
Sbjct:    2 AKNIKFDIEARDGLKRGVDALANAVKVTLGPKGRNVIIGKSFGGPTVTKDGVTVAKEIELQDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGIDKAVEAIVADLTKQAKVVGSDSEKIKQIASISANNDEVIGELIANAFAKVGKEGVITVEEAKGTDTYVDVVEGMQFDRGYLSPYFVTNPEKMDAELENPYILLYDKKVSSLKELLPVL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.440e-62
Identity = 119/236 (50.42%), Postives = 170/236 (72.03%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AK ++ D ++R A+  G+D ++D V +TLGP+GRNVVL++ FG+P + NDGVTIA+ I+L DP EN GA L++EVASKTND AGDGTTTA+VLA+ ++  G+  V +GANP+ +KRGI+K V  +VEEL+K A+P+E + DI  VA ISA ND+ IG +IA+A+DKVG DGV+                GM+ DRGY+S   +T+PE++    E   +L+TD+KISA+ +I+P+L
Sbjct:    2 AAKLVSLDMQARTALIKGLDTVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVKRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAISANNDEEIGNLIAEAMDKVGKDGVITVEESQGITTTLELVEGMQFDRGYLSAYMITDPERMEAVLEEPYILITDKKISAVSEILPIL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_BACTR (60 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.440e-62
Identity = 124/235 (52.77%), Postives = 171/235 (72.77%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK+I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+                GM+ DRGY SP  +T+ EK+    EN  +L+TD+KIS I+DI+P+L
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYASPYMITDTEKMEAVLENPYILITDKKISNIQDILPIL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.440e-62
Identity = 122/235 (51.91%), Postives = 173/235 (73.62%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK ++F   SR+A++ G+D L+DAV +T+GPRGRNVVL++ FG+P +VNDG TIAR IEL DP EN GA LI++VAS+T D AGDGTTTA+VLA+ +++ GL +  +GA+PV L+RG++K V  +V+ L++R++P+ G D I+ VAT+S+G DD +G MIA+A+D+V  DGV+                GM  DRGY SP FVT+ ++ I EFEN  +L+TD+KISAI D++P+L
Sbjct:    2 AKLLSFSDESRSALERGVDALADAVRVTIGPRGRNVVLEKKFGAPDIVNDGDTIAREIELDDPFENLGAKLIQQVASRTKDKAGDGTTTATVLAQAMVREGLRNTAAGASPVELRRGMEKAVAQVVDGLQQRSQPVAG-DAIRQVATVSSGGDDEVGRMIAEAMDRVSADGVITVEESKSLATELEVTEGMAFDRGYSSPYFVTDADRQICEFENPLILLTDRKISAIADLVPVL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 239.965 bits (611), Expect = 1.440e-62
Identity = 119/235 (50.64%), Postives = 169/235 (71.91%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK I ++  +R A++ G+D L++AV +TLGP+GRNVVL++ FGSP+++NDG+TIA+ IEL D +EN G +LIR+ ASKTND AGDGTTTA+VLA  I+K GL +V +GANP+SLKRGIDK    LV  +++ A+P+     I  V  ISAGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP FVT+ E++    E+ R+L+TD+KI+ ++D++P+L
Sbjct:    2 AKSIIYNDEARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEIELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGIDKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVGQEGVISLEEGKSMTTELEITEGMRFDKGYISPYFVTDAERMEAVLEDPRILITDKKINLVQDLVPIL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_SULNB (60 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-1) GN=groL PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.880e-62
Identity = 117/235 (49.79%), Postives = 168/235 (71.49%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK+I F  ++R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++AR IEL D +EN GA L++EVAS T D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    ++EEL+K ++ ++ + +I  VATISA +D+ IG +IA+A+D+VG DGV+                GM+ DRGY+SP FVTN EK+  E EN  +L+TD KI+++KD+IP+L
Sbjct:    2 AKEIFFSDKARNGLFEGVTKLADAVKVTMGPRGRNVLIQKSFGAPHITKDGVSVAREIELEDTLENMGAQLVKEVASNTADEAGDGTTTATVLAHSIFKEGLRNITAGANPIEVKRGMDKASAAIIEELKKISKEVKDKKEIAQVATISANSDETIGNLIAEAMDRVGKDGVITVEEAKGINDDLEVVEGMQFDRGYLSPYFVTNTEKMTCEMENPLILITDSKITSLKDLIPVL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.880e-62
Identity = 123/236 (52.12%), Postives = 166/236 (70.34%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL D  EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+SP FVTNPE +  E E A +L+ D+KIS +K+++P+L
Sbjct:    2 AAKDILFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELEDAFENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRSISRNISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAELEEALILIYDKKISNMKELLPIL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.456e-62
Identity = 122/236 (51.69%), Postives = 167/236 (70.76%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IELAD +EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+SP FVTNPE +  E E+  +L+ D+KI  +K+++P+L
Sbjct:    2 TAKDIIFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAEIEDPLILIHDKKIGNMKELLPIL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_GRAFK (60 kDa chaperonin OS=Gramella forsetii (strain KT0803) GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.207e-62
Identity = 120/236 (50.85%), Postives = 170/236 (72.03%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AKDI FD ++R  ++ G+D L++AV +TLGP+GRNV++ + FG+P V  DGVT+A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP+ LKRGIDK V  L  +L K+ + + +  + IK VA+ISA NDD+IG +IA A  KVG +GV+                GM+ DRGY+SP FVTN EK+  + E+  +L+ D+KIS++KD++P+L
Sbjct:    2 AKDIKFDIQARNGIKRGVDALANAVKVTLGPKGRNVIISKSFGAPTVTKDGVTVAKEIELEDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVQEGLKNVAAGANPMDLKRGIDKAVEALTADLAKQTKEVGDSSEKIKQVASISANNDDMIGDLIAQAFGKVGKEGVITVEEAKGTETHVDVVEGMQFDRGYLSPYFVTNSEKMTADLEDPYILLFDKKISSMKDLLPVL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_CALS8 (60 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.207e-62
Identity = 122/236 (51.69%), Postives = 175/236 (74.15%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AK I FD+ +R A++ G++KL+D V +TLGP+GRNVVL++ FGSP++VNDGVTIA+ IEL DP EN GA ++REVASKTND AGDGTTTA+VLA+ +I+ GL ++ +GANP+ L+RGI K V  +V+E++K ++ + G++DI  VA+ISAG D+ IG ++ADA++KV  DGV+                GM+ DRGYIS   VT+ E++    ++  +L+TD+KIS I+DI+PLL
Sbjct:    2 AAKMILFDEEARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRRGIQKAVDVVVDEIKKMSKKVRGKEDITYVASISAG-DEEIGKLVADAMEKVTNDGVITVEESKTTETTLEIVEGMQFDRGYISAYMVTDTERMEAVLDDPYILITDKKISTIQDILPLL 236          
The following BLAST results are available for this feature:
BLAST of CX672016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_FLAPJ1.440e-6250.8560 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_DICTD1.440e-6250.4260 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_BACTR1.440e-6252.7760 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH602_SYNPX1.440e-6251.9160 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH601_SYNY31.440e-6250.6460 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_SULNB1.880e-6249.7960 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-... [more]
CH60_CHLP81.880e-6252.1260 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH60_CHLL22.456e-6251.6960 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH60_GRAFK3.207e-6250.8560 kDa chaperonin OS=Gramella forsetii (strain KT0... [more]
CH60_CALS83.207e-6251.6960 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E02-I4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672016 ID=CX672016; Name=CX672016; organism=Citrus sinensis; type=EST; length=900bp
CTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTGTT
GAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAGTT
TGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGTGC
TGGTCACGGATCAAAAAATTTCTGCAATAAAGGATATAATTCCCTTGTTA
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