CX672016

Overview
NameCX672016
Unique NameCX672016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672016_ssr724 microsatellite CX672016_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:114..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 122/236 (51.69%), Postives = 172/236 (72.88%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AK IAFD+ +R+ +  G+ KLS AV  TLGP+GR VVL+ +FGSP + NDGVTIA+ I+L DP EN GA L +EVASKTND AGDGTTTA+VLA  +++ G+ +VT+GANP++L+RGI+K V  + EE++K +RP+ G+ DI  VATISA  D  IG++IA+A++KVG DGV+                GM+ DRGY+SP FVT+PE++    E+  +++TD+KIS +++ +PLL
Sbjct:    2 AAKLIAFDEEARSKLLTGVLKLSKAVKATLGPKGRYVVLERKFGSPLITNDGVTIAKEIDLEDPYENLGAQLAKEVASKTNDVAGDGTTTATVLAEAMVREGMKNVTAGANPIALRRGIEKAVEAVTEEIKKLSRPVSGKRDITEVATISA-KDQQIGSIIAEAMEKVGKDGVVTVEEGKSLGMELEFVEGMQFDRGYVSPYFVTDPERMETVLEDPLIVITDKKISNVQEFLPLL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 124/235 (52.77%), Postives = 172/235 (73.19%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK I F + SR AMQAG+DKL++AV +TLGP+GRNVVLD+ FGSP + NDGVTIA+ IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ +++GI   V   VE+++K ++ ++G++DI  VA ISA  D  IG +IADA+++VG +GV+                GM+ DRGY+SP  VT+ EK+    EN  +L+TD+KIS I++I+P+L
Sbjct:    2 AKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVDGKEDIARVAAISAA-DPEIGKLIADAMERVGNEGVITVEESNTMATELEVVEGMQFDRGYLSPYMVTDAEKMEAVLENPYILLTDKKISNIQEILPIL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 123/236 (52.12%), Postives = 165/236 (69.92%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            SAKDI FD  +RA ++ G+DKL+DAV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL D  EN GA ++REV+SKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGIDK V  ++ EL   +  I G+ +I  V TISA ND  IG +IADA++KVG DGV+                GM+ DRGY+SP FVTN EK+  E E+  +L+ D+KIS +KD++P+L
Sbjct:    2 SAKDILFDASARAKLKVGVDKLADAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELEDSFENMGAQMVREVSSKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDKAVKEVIGELRTISNDISGKIEIAQVGTISANNDPEIGQLIADAMEKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNSEKMDAELEDPYILIHDKKISNMKDLLPIL 237          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 123/236 (52.12%), Postives = 174/236 (73.73%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            + K I F + +R A++ G++ L+DAV +TLGP+GRNVVL++ FGSP+++NDGV+IAR IELADP+EN GA L++EVA+KTND AGDGTTTA+VLA+ II+ GL +VT+GANP+ L++GI+K V   VEE++  A+P+E  + I  VA ISA ND+ IG +IA+A++KVG DGV+                GM  DRGYISP  +T+P+K+     +  +L+TD+KISAI D++P+L
Sbjct:    2 AGKQILFREDARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIAREIELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKGIEKAVAKAVEEIKAIAKPVETSEAIAQVAAISA-NDEEIGKLIAEAMEKVGKDGVITVEESQGLGTTLEVVEGMSFDRGYISPYMITDPDKMEAILNDPYILITDKKISAIADLLPIL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 122/236 (51.69%), Postives = 174/236 (73.73%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            +AK I FD+ +R A++ G++KL+D V +TLGP+GRNVVL++ FGSP++VNDGVTIA+ IEL DP EN GA ++REVASKTND AGDGTTTA+VLA+ +I+ GL ++ +GANP+ L++GI K V  +VEE+ K ++ + G++DI  VA+ISAG D+ IG ++ADA++KV  DGV+                GM+ DRGYIS   VT+ E++    ++  +L+TD+KIS I+DI+PLL
Sbjct:    2 AAKMILFDEEARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRKGIQKAVDVVVEEIRKMSKKVRGKEDITYVASISAG-DEEIGKLVADAMEKVTNDGVITVEESKTTETTLEIVEGMQFDRGYISAYMVTDTERMEAVLDDPYILITDKKISTIQDILPLL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH602_PROMT (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL2A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 120/235 (51.06%), Postives = 174/235 (74.04%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK ++F   SR A++ G++ L++A+ +T+GP+GRNVV+++ FG+P +VNDGVTIA+ I+L DP EN GA LI +VASKT + AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V++L+K+++ + G D IK VAT+SAG D+ IG+MIADAIDKV  DGV+                GM  DRGY SP FVT+ ++LI EFEN  +L+TD+KIS+I D+IP+L
Sbjct:    2 AKLLSFSDESRGALEKGVNNLANALKVTIGPKGRNVVIEKKFGAPDIVNDGVTIAKEIDLEDPFENIGAKLIEQVASKTKEKAGDGTTTATVLAQFMVQEGLRNTAAGASPIELRRGMEKAVAQIVDDLKKKSKSVSG-DAIKQVATVSAGGDEEIGSMIADAIDKVSFDGVITVEESKSLATELDITEGMAFDRGYSSPYFVTDEDRLICEFENPSILITDKKISSIADLIPVL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.189e-62
Identity = 120/235 (51.06%), Postives = 174/235 (74.04%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            AK ++F   SR A++ G++ L++A+ +T+GP+GRNVV+++ FG+P +VNDGVTIA+ I+L DP EN GA LI +VASKT + AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V++L+K+++ + G D IK VAT+SAG D+ IG+MIADAIDKV  DGV+                GM  DRGY SP FVT+ ++LI EFEN  +L+TD+KIS+I D+IP+L
Sbjct:    2 AKLLSFSDESRGALEKGVNNLANALKVTIGPKGRNVVIEKKFGAPDIVNDGVTIAKEIDLEDPFENIGAKLIEQVASKTKEKAGDGTTTATVLAQFMVQEGLRNTAAGASPIELRRGMEKAVAQIVDDLKKKSKSVSG-DAIKQVATVSAGGDEEIGSMIADAIDKVSFDGVITVEESKSLATELDITEGMAFDRGYSSPYFVTDEDRLICEFENPSILITDKKISSIADLIPVL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.471e-62
Identity = 123/234 (52.56%), Postives = 171/234 (73.08%), Query Frame = 1
Query:  202 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+                GM+ DRGYISP FVT+ EK+ V  +   +L+TD+K+SA+K +IP+L
Sbjct:    3 KLLKFNEEARRALERGVDKVANAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVERAVEEIKKLSKKLSGREDIAHVAAISA-NSPEIGELIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVTDAEKMEVVLKEPSILITDRKLSAVKPLIPIL 235          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH603_ANAVT (60 kDa chaperonin 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL3 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.471e-62
Identity = 114/234 (48.72%), Postives = 170/234 (72.65%), Query Frame = 1
Query:  202 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            K I +   +R  ++ G D L++AV +TLGP+GRN+VL++ FG+P++VNDGVTIA+ IEL DP EN G +L+R+ ASKTND AGDGTTTA VLA  ++K GL +VT+GA+P+++KRGIDK    ++E++++ ARPI+   DI+ VATISAGND  +G ++A+A+++VG +GV+                GM  DRGY+SP FVT+PE++    E   +L+TD+KI+ ++D++P+L
Sbjct:    3 KTILYKDTARWTLEKGFDALTEAVAVTLGPKGRNIVLEKKFGAPQIVNDGVTIAKEIELEDPAENTGISLLRQAASKTNDVAGDGTTTAIVLAHAMLKEGLRNVTAGADPLTVKRGIDKATEFVIEKIQEHARPIKDSRDIEQVATISAGNDPEVGRIVAEAMERVGKEGVISLEEGRSTTTELEVTEGMRFDRGYVSPYFVTDPERMEAVLEEPHILITDRKITMVQDLVPIL 236          
BLAST of CX672016 vs. ExPASy Swiss-Prot
Match: CH60_HELHP (60 kDa chaperonin OS=Helicobacter hepaticus GN=groL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.145e-62
Identity = 119/236 (50.42%), Postives = 171/236 (72.46%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 900
            ++K+I F   +R  +  GI +LSDAV +T+GP+GRNV++ + +G+P +  DGV++A+ IELADP+ N GA L++EVASKT D+AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    ++EEL+K ++ I G+ DI  VATISA +D+ IG +IA+A++KVG DGV+                GM+ DRGY+S  FVTN +K+  + ENA VL+TD+KIS +K+I+PLL
Sbjct:    2 ASKEINFSDSARNKLYEGIKQLSDAVKVTMGPKGRNVLIQKSYGAPTITKDGVSVAKEIELADPIANMGAQLVKEVASKTADAAGDGTTTATVLAYSIYKEGLRNITAGANPIEVKRGMDKASAAIIEELKKSSKKIGGKSDIAQVATISANSDENIGALIAEAMEKVGKDGVITVEEAKGINDELSVVEGMQFDRGYLSAYFVTNTDKMTAQLENAYVLLTDKKISNMKEILPLL 237          
The following BLAST results are available for this feature:
BLAST of CX672016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_COPPD4.189e-6251.6960 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH60_CLOBO4.189e-6252.7760 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH60_CHLPB4.189e-6252.1260 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_CARHZ4.189e-6252.1260 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_ANATD4.189e-6251.6960 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH602_PROMT4.189e-6251.0660 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_PROM14.189e-6251.0660 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_THENE5.471e-6252.5660 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH603_ANAVT5.471e-6248.7260 kDa chaperonin 3 OS=Anabaena variabilis (strain... [more]
CH60_HELHP7.145e-6250.4260 kDa chaperonin OS=Helicobacter hepaticus GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E02-I4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672016 ID=CX672016; Name=CX672016; organism=Citrus sinensis; type=EST; length=900bp
CTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTGTT
GAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAGTT
TGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGTGC
TGGTCACGGATCAAAAAATTTCTGCAATAAAGGATATAATTCCCTTGTTA
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