CX672007

Overview
NameCX672007
Unique NameCX672007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:132..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.000e-26
Identity = 70/159 (44.03%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  301 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 774
            P +L G  PGD+G+DP GL+  P++F +++  E+ H RWAML   G ++PEA      N      W    A L DG    Y G  +P  NL   +  E + +  AE  R T   D E K +PGG FDPLG +KDP +F  LK+KEIKNGRLAM A +GF
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL--GNWVKAQEW----AALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 76/182 (41.76%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  307 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777
            YL G +PGD+G+DP GLS           K+ AY E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       D  +PGGP F+PLG  KD      LK+KEIKNGRLAM A+LG+F
Sbjct:   65 YLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 73/192 (38.02%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  250 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLG 771
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 72/192 (37.50%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  250 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLG 771
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 73/182 (40.11%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  307 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777
            YL G +PGDYG+DP GLS           ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       +  +PGGPF +PLG  KD      LK+KE+KNGRLAM A+LG+F
Sbjct:   67 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 242          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 71/202 (35.15%), Postives = 96/202 (47.52%), Query Frame = 1
Query:  301 PEYLTGEVPGDYGYDPFGLSK----------------------------------KPDDFSKY---------QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 774
            PE+L G + GD G+DPFGL K                                  KP  F  Y         +  ELIH RWAMLG  G I  EA             W   G + L++G++  Y G+ +P +L   +  E+++VG  E+ R  + LD E +++PGG FDPLGLA DP++   LK+ EIK+ RLAM A L F
Sbjct:   66 PEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIF 256          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.827e-20
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  301 PEYLTGEVPGDYGYDPFGLSKK------------------------------PDDFS---------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGF 774
            PE+L G +PGD G+DP GLSK                               PD+ S               +++  ELIH RWAML   G ++ EA             W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  EIK+ RLAM +  G+
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 252          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19
Identity = 72/225 (32.00%), Postives = 102/225 (45.33%), Query Frame = 1
Query:  235 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 774
            AK    DR ++ P      ++ PEYL G + GDYG+DPFGL K  +                                              +++  ELIH RWAML   G I  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM   LGF
Sbjct:   45 AKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGF 253          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 65/203 (32.02%), Postives = 95/203 (46.80%), Query Frame = 1
Query:  301 PEYLTGEVPGDYGYDPFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 774
            P++L G + GDYG+DPFGL K  +                                              +++  ELIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF
Sbjct:   65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256          
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 62/171 (36.26%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  301 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 774
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGF 219          
The following BLAST results are available for this feature:
BLAST of CX672007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB121_HORVU1.000e-2644.03Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB13_SOLLC1.952e-2241.76Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB12_SOLLC1.266e-2138.02Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.653e-2137.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_PEA2.159e-2140.11Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4C_ARATH8.203e-2135.15Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.827e-2032.84Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4B_ARATH2.639e-1932.00Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH7.678e-1932.02Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB24_ARATH2.918e-1836.26Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14D09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D09-G18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672007 ID=CX672007; Name=CX672007; organism=Citrus sinensis; type=EST; length=777bp
AGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGC
TGCCTCCATTGGAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCA
GTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAG
CCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAA
GCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTC
CTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATC
CCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTT
TGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAAT
TGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCT
GAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTT
CAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAA
AGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTT
GTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGA
CAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATC
CTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTT
GCAATGTTTGCCATGCTTGGTTTCTTT
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