CX672007
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17 Identity = 57/110 (51.82%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 463 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 KFG EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF Sbjct: 9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFF 113
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.891e-17 Identity = 58/171 (33.92%), Postives = 84/171 (49.12%), Query Frame = 1 Query: 301 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 774 P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G P+ W+ G YF + + ++ +++ V + + I N L + +PGG F+PL A + K KEI NGRLAM A LGF Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGF 218
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 Query: 589 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 Query: 589 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 Query: 589 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF Sbjct: 15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 79
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 Query: 589 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 Query: 589 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.943e-15 Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 565 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777 +L+ + +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD F LKVKEIKNGRLAM MLGF+ Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFY 85
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13 Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 1 Query: 292 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 771 +E P LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K WF+ G +DG L + + + EY+R G + + D+ +PG FDPL L D + E+KNGRLA+ A+ G Sbjct: 194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAG 327 HSP 2 Score: 74.7146 bits (182), Expect = 6.295e-13 Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1 Query: 301 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 771 P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE WF+ + D N FAV+A + +V EY+R + N + D+ +PG FDPL L + K EIKNGRLAM M G Sbjct: 381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFG 512
BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13 Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1 Query: 301 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 771 P +LTGE P D G+DP ++ P +++ + E+ HAR +ML G I+PE K WF+ G +DG I L F ++A + EY+R G + + D+ +PG FDPL L D + +EIKNGRLAM +LG Sbjct: 169 PAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK--------GAWFEVGN-SVDG-----------IKLGFILMA---IAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYTK------REIKNGRLAMTGLLG 298 The following BLAST results are available for this feature:
BLAST of CX672007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672007 ID=CX672007; Name=CX672007; organism=Citrus sinensis; type=EST; length=777bpback to top |