CX672007

Overview
NameCX672007
Unique NameCX672007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672007 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  589 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 777
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFF 87
The following BLAST results are available for this feature:
BLAST of CX672007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_RAPSA2.826e-1357.58Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14D09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D09-G18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672007 ID=CX672007; Name=CX672007; organism=Citrus sinensis; type=EST; length=777bp
AGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGC
TGCCTCCATTGGAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCA
GTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAG
CCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAA
GCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTC
CTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATC
CCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTT
TGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAAT
TGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCT
GAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTT
CAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAA
AGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTT
GTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGA
CAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATC
CTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTT
GCAATGTTTGCCATGCTTGGTTTCTTT
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