CX671997

Overview
NameCX671997
Unique NameCX671997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:16..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671997 vs. ExPASy Swiss-Prot
Match: WDR48_BRUMA (WD repeat-containing protein 48 homolog OS=Brugia malayi GN=Bm1_41555 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 44/168 (26.19%), Postives = 74/168 (44.05%), Query Frame = 3
Query:  243 HSHFVQDVVLSSDGQFALSGSWDGELRLWDLADGKSPRRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV-----SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 731
            H+ +V D+VL       +S S D  +++W+   G        H   V ++A++ D   + S   D+ I LW+     K T       T  +     S    + N     ++S S ++ ++V++   C+    L GHT  V  V V+ DG+ C S   DG I LW + +
Sbjct:   85 HTDWVNDIVLCCG---VISASSDTTVKVWNAQKGFCMSTLRTHRDYVRALAYARDVEMVASGGFDQLIYLWDIATLTKLTALNNTVTTSSLTGNKDSIYSLATNPSGTVVISGSTEKVLRVFDPRACQKLMKLRGHTDNVKAVVVNRDGTQCISASSDGTIKLWSIGQ 249          
BLAST of CX671997 vs. ExPASy Swiss-Prot
Match: WDR16_MACFA (WD repeat-containing protein 16 OS=Macaca fascicularis GN=WDR16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 50/216 (23.15%), Postives = 94/216 (43.52%), Query Frame = 3
Query:   99 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--DGKSPRRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH-TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 737
            H + V  I  P   +++  T ++ K I VWH +             + H   V  +  +SD +  +SG  +GE+R+W +     K       H   V  +    +N + V+AS D T  +W+ +   +    +         CV + P   Q  I+++  DR +  W + +  +   L G  +G +N + ++ +G    +GG D ++ +WD  EG+
Sbjct:  331 HFEAVEDIVFPFGTAELFATCAK-KDIRVWHTSSN-----------SAHRIGVTAIATTSDCKRVISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKKNNEECVTASTDGTCIIWDLV---RLRRNQMILANTLFQCVCYHPEEFQ--IITSGTDRKIAYWEVFDGTVIRELEGSLSGSINGMDITQEGVHFVTGGNDHLVKVWDYNEGE 529          
BLAST of CX671997 vs. ExPASy Swiss-Prot
Match: PFS2_KLULA (Polyadenylation factor subunit 2 OS=Kluyveromyces lactis GN=PFS2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 45/162 (27.78%), Postives = 70/162 (43.21%), Query Frame = 3
Query:  249 HFVQDVVLSSDGQFALSGSWDGELRLWDLADGKSPRRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 734
            H +  +  + +G+  +  +++GE  LW  +          H   V  + +S     +VS S D  +K+W         + +  AH E V  + FSP   +   VS S D  +K+WN SN +    L+GH   V +    P   L  SG KD +I  WD   G
Sbjct:   82 HVIPALTWTPEGRRLVVATYNGEFSLWSGSSFNFESIMQAHDSAVTVMTYSHTGDWMVSGSADGELKIWQPNFNMVKVMDQ--AHMECVREISFSPTDQK--FVSCSDDNVLKIWNFSNGQQERVLSGHHWDVKSCDWHPKMGLIVSGSKDNLIKFWDPRSG 239          
BLAST of CX671997 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 42/145 (28.97%), Postives = 65/145 (44.83%), Query Frame = 3
Query:  294 LSGSWDGELRLWDLADGKSPRRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 728
            L+   +G ++LWD   G    RF GH   V  +AF       VS   D  + +WN   + +  +     H ++V    F      P I+S S D+T+++WN  +    A L GH+ YV   A  P   L  S   D  + +WD++
Sbjct:   27 LTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNY--KSRKLLFSLCGHMDYVRVCTFHHE--YPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDIS 167          
The following BLAST results are available for this feature:
BLAST of CX671997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
WDR48_BRUMA7.803e-1126.19WD repeat-containing protein 48 homolog OS=Brugia ... [more]
WDR16_MACFA7.803e-1123.15WD repeat-containing protein 16 OS=Macaca fascicul... [more]
PFS2_KLULA7.803e-1127.78Polyadenylation factor subunit 2 OS=Kluyveromyces ... [more]
COPA_SCHPO7.803e-1128.97Putative coatomer subunit alpha OS=Schizosaccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14D04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D04-G8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671997 ID=CX671997; Name=CX671997; organism=Citrus sinensis; type=EST; length=785bp
CAAACCCTAACAGCAGGGGGGAAAAAAAAAATACCGAAAGTACATTTGCT
ATCGGAAAAATGGCTGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCA
CACCGACATGGTAACGGCGATCGCCACCCCAATCGACAACTCTGACATGA
TCGTGACGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACCTCACTAAG
GAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCA
CTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCG
GCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGATGGCAAATCC
CCCCGCAGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTC
GATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATCAAGT
TGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCT
CACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCC
CACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGA
GCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGTGAAC
ACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGA
TGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTACTCGC
TCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTC
back to top