CX671996

Overview
NameCX671996
Unique NameCX671996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671996_ssr367 microsatellite CX671996_ssr367:367..378. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:426..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = -1
Query:  449 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 880
            + S S+D  IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260          

HSP 2 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = -1
Query:  428 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVED 886
            R + +   D  + LW+        I     HT  V  VR   NT +  IV+ S   +++VW+L   K+  TL GH   + ++   P G   ASG +D  I LWD+     ++        +  L FSP+  WL  AA + ++K+WDL +  ++ +
Sbjct:   34 RLLATGGDDCRVNLWSI--NKPNCIMSLTGHTSPVESVRL--NTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSE 184          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = -1
Query:  449 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 880
            + S S+D  IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260          

HSP 2 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = -1
Query:  428 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVED 886
            R + +   D  + LW+        I     HT  V  VR   NT +  IV+ S   +++VW+L   K+  TL GH   + ++   P G   ASG +D  I LWD+     ++        +  L FSP+  WL  AA + ++K+WDL +  ++ +
Sbjct:   34 RLLATGGDDCRVNLWSI--NKPNCIMSLTGHTSPVESVRL--NTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSE 184          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBB3_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Canis familiaris GN=GNB3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = -1
Query:  272 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSADGSTLFSGYTDGVIRVW 811
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S  G  LF+GY D    +W
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSDE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNIW 297          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883
            ++ +A RD  I++W  N   +  Y I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883
            ++ +A RD  I++W  N   +  Y I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883
            ++ +A RD  I++W  N   +  Y I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883
            ++ +A RD  I++W  N   +  Y I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883
            ++ +A RD  I++W  N   +  Y I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: SEL10_CAEEL (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = -1
Query:  455 RQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAAT-EQSIKIWD 886
            R IVS S DRT+K+W+T+ G   +T+Q    HT  V C+  + + L    V+ S D T++VW++ + +  ATL GH   V  V    DG+   SGG D  + +W+   G+ + +L      +++L F   R  +C+ + + SI++WD
Sbjct:  309 RYIVSGSTDRTVKVWSTVDGSLLHTLQ---GHTSTVRCMAMAGSIL----VTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWD 446          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = -1
Query:  272 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSLDA------GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVW 880
            IVSASRD+TIK+W       Y ++    H EWV  VR  PN     I S+S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L        G ++H       +Y +  A +++++IWD ++K   + L                         + TSL++      + +G  D  ++VW
Sbjct:  207 IVSASRDKTIKMWEVA--TGYCVKTFTGHREWVRMVR--PNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGVLVH----PGGKYIVSCADDKTLRIWDYKNKRCTKTLSA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          

HSP 2 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 45/163 (27.61%), Postives = 76/163 (46.63%), Query Frame = -1
Query:  455 IVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA------------------SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNR-YWLCAATEQSIKIWD 880
            I S+S D+T+++W     ECK  ++E   H   V C+ ++P +  PTI+ A                  S D+T+K+W++S      TL GH  +V  V V P G    S   D  + +WD    +   +L A    + +L F     Y +  + +Q++K+W+
Sbjct:  249 IASSSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGVLVHPGGKYIVSCADDKTLRIWDYKNKRCTKTLSAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408          
The following BLAST results are available for this feature:
BLAST of CX671996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
KTNB1_MOUSE2.678e-1331.51Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN2.678e-1331.51Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
GBB3_CANFA2.678e-1329.89Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
WDR48_PONAB4.568e-1328.05WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MACFA4.568e-1328.05WD repeat-containing protein 48 OS=Macaca fascicul... [more]
WDR48_HUMAN4.568e-1328.05WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_CHICK4.568e-1328.05WD repeat-containing protein 48 OS=Gallus gallus G... [more]
WDR48_BOVIN4.568e-1328.05WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
SEL10_CAEEL4.568e-1333.33F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
LIS1A_DANRE4.568e-1325.76Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14D04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D04-G8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671996 ID=CX671996; Name=CX671996; organism=Citrus sinensis; type=EST; length=886bp
TTGACAAGAAGTAAACTACAGTTTATAATTAAACAAAACCGGATGTAATG
TAACACATCTAAAATAATAATAAGCCAAACCAAAACAGCAGAGGCCTCAA
AGCCATATAAGATCCAAATAAAGAGAACAAAATATCCTTAAAAACATTTT
GAACAAAATCTTAAATCTTAAATAGGTCTGAAACTGCCTACAAAGTCGAG
AAACTAGTTTGTAATCGAAAAAGAACAGCAGTTTGCAATTACTCAAGCAG
TTTTCAATAACGGCCAATACCCCAGACTCTGATCACACCATCTGTATAAC
CACTGAACAAGGTGCTTCCATCAGCACTCCAGTTCAAGCTTGTGCAGTAA
ATGTTCTTCTTTTTTATGGTGGTGGTGGCGGTGGTGGCCTCAGATTTCTC
GGCCTCGGTCTTAAGATCAACCTTAAGATCCTCGACAATGCTCTTGCTCT
CCAAATCCCAGATCTTTATACTCTGCTCAGTCGCCGCACACAACCAATAC
CTATTAGGACTGAAGCAGAGCGCGTGAATGACAGCACCAGCGTCGAGCGA
GTAGAGTCTTTTTCCCTCAGCCAAATCCCACAACAGAATCACACCATCTT
TCCCTCCACTGGCACACAACGAACCATCCGGCGACACTGCGACGGTGTTC
ACGTATCCAGTGTGCCCGGCAAGAGTAGCCCTAAGCTTGCAGTTGCTCAA
ATTCCACACTTTGACCGTACGGTCCCACGAGGCGGAAACGATAGTGGGCT
GAAGCGTGTTGGGGCTGAACCTAACACAAGAAACCCACTCAGTGTGAGCG
TCTCCCTCTTGAATCGTGTACTTGCACTCGCCGAGCGTGTTCCACAACTT
GATCGTACGGTCACGAGAGGCCGATACAATCTGACG
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