CX671996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13 Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = -1 Query: 449 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 880 + S S+D IKLW+ + C + + H++ V C+RFSP+ + SA+ D TVK+W+L+ K+ + GHTG VN V P+ L ASG D I WDL + + + ++ + ++ F+P+ L + + S++++ E Sbjct: 120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260 HSP 2 Score: 68.5514 bits (166), Expect = 5.585e-11 Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = -1 Query: 428 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVED 886 R + + D + LW+ I HT V VR NT + IV+ S +++VW+L K+ TL GH + ++ P G ASG +D I LWD+ ++ + L FSP+ WL AA + ++K+WDL + ++ + Sbjct: 34 RLLATGGDDCRVNLWSI--NKPNCIMSLTGHTSPVESVRL--NTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSE 184
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13 Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = -1 Query: 449 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 880 + S S+D IKLW+ + C + + H++ V C+RFSP+ + SA+ D TVK+W+L+ K+ + GHTG VN V P+ L ASG D I WDL + + + ++ + ++ F+P+ L + + S++++ E Sbjct: 120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260 HSP 2 Score: 68.5514 bits (166), Expect = 5.585e-11 Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = -1 Query: 428 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVED 886 R + + D + LW+ I HT V VR NT + IV+ S +++VW+L K+ TL GH + ++ P G ASG +D I LWD+ ++ + L FSP+ WL AA + ++K+WDL + ++ + Sbjct: 34 RLLATGGDDCRVNLWSI--NKPNCIMSLTGHTSPVESVRL--NTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSE 184
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBB3_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Canis familiaris GN=GNB3 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13 Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = -1 Query: 272 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSADGSTLFSGYTDGVIRVW 811 +E AHT ++SC RF + IV++S D T +W++ + + GHTG ++AVSPD L SG D LWD+ EG R + I+A+CF PN +C ++ S +++DL + + + +I C TS+ +S G LF+GY D +W Sbjct: 137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSDE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNIW 297
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1 Query: 260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883 ++ +A RD I++W N + Y I + HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1 Query: 260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883 ++ +A RD I++W N + Y I + HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1 Query: 260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883 ++ +A RD I++W N + Y I + HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1 Query: 260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883 ++ +A RD I++W N + Y I + HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 62/221 (28.05%), Postives = 98/221 (44.34%), Query Frame = -1 Query: 260 QIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 883 ++ +A RD I++W N + Y I + HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 44 RLFTAGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: SEL10_CAEEL (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = -1 Query: 455 RQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAAT-EQSIKIWD 886 R IVS S DRT+K+W+T+ G +T+Q HT V C+ + + L V+ S D T++VW++ + + ATL GH V V DG+ SGG D + +W+ G+ + +L +++L F R +C+ + + SI++WD Sbjct: 309 RYIVSGSTDRTVKVWSTVDGSLLHTLQ---GHTSTVRCMAMAGSIL----VTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWD 446
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13 Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = -1 Query: 272 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSLDA------GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVW 880 IVSASRD+TIK+W Y ++ H EWV VR PN I S+S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L G ++H +Y + A +++++IWD ++K + L + TSL++ + +G D ++VW Sbjct: 207 IVSASRDKTIKMWEVA--TGYCVKTFTGHREWVRMVR--PNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGVLVH----PGGKYIVSCADDKTLRIWDYKNKRCTKTLSA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 HSP 2 Score: 67.781 bits (164), Expect = 9.526e-11 Identity = 45/163 (27.61%), Postives = 76/163 (46.63%), Query Frame = -1 Query: 455 IVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA------------------SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNR-YWLCAATEQSIKIWD 880 I S+S D+T+++W ECK ++E H V C+ ++P + PTI+ A S D+T+K+W++S TL GH +V V V P G S D + +WD + +L A + +L F Y + + +Q++K+W+ Sbjct: 249 IASSSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGVLVHPGGKYIVSCADDKTLRIWDYKNKRCTKTLSAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 The following BLAST results are available for this feature:
BLAST of CX671996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 162
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671996 ID=CX671996; Name=CX671996; organism=Citrus sinensis; type=EST; length=886bpback to top |