CX671993

Overview
NameCX671993
Unique NameCX671993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 48/141 (34.04%), Postives = 79/141 (56.03%), Query Frame = -3
Query:   50 EVYSTEIKNLTLKILDQMAKALRMDPNDM------EELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDG--KWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATF 448
            E +  E++ L  K+L+    AL +    +      +++ E       +N+YP C  P++ +G  +H D+   T +LQ + + GLQ+ + G  +WV V  +P A VVN+GD+ +ILTNG + S+ HRA VN   +R+SL  F
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYF 303          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = -3
Query:   50 EVYSTEIKNLTLKILDQMAKALRMDPNDM------EELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDG--KWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATF 448
            E +  E++ L  K+L+    AL +    +       ++ E       +N+YP C  P++ +G  +H D+   T +LQ + + GLQ+ + G  +WV V  +P A VVN+GD+ +ILTNG + S+ HRA VN   +R+SL  F
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYF 303          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 54/175 (30.86%), Postives = 89/175 (50.86%), Query Frame = -3
Query:    2 PLPFRDDWEVYSTEIKNLTLKILDQMAKALRM-DPNDMEELF--ENGMQAFRMNYYPPCLQ-------PEKV-------VGHNSHCDASALTVLLQINEMDGLQIKKD-GKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 472
            P+ F      Y   +K+LT +IL+  A+ L + D + + ++   E+     R+N+YPP  +       P K+       +G   H D   LT+L + N + GLQI    G W+ V P P  F V +GD L++LTNG + S+ HR   N+ K R+S+  F +  L+  + P + ++
Sbjct:  125 PIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTIL-RSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMV 298          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 49/159 (30.82%), Postives = 85/159 (53.46%), Query Frame = -3
Query:    8 EVYSTEIKNLTLKILDQMAKALRMDPNDMEELFEN-------GMQAF-RMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIK----KDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATS 448
            E Y   + +L+ +++  +  +L +   D+  L  +        +Q+F ++N YP C  P   +G   H D+S LT+L Q N + GL+I+    +  +W+ V+P+  + VV +GD+  I++NG + S  HRA VN    R+S A F     + ++GP TS
Sbjct:  159 EEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGN-IPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTS 316          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 45/155 (29.03%), Postives = 76/155 (49.03%), Query Frame = -3
Query:    5 FRDDWEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKK--DGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSL 463
            FR     Y  ++      ++  +A++L + P+  +E   +   + R+  YP    P ++ G   H DA ALT++ Q N + GL+I       +++V P P A + N+GD++ ILTN  Y S  HR   NS  +R ++  F    +D  + P   L
Sbjct:  215 FRKALVKYHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLLRYPS--SPNRL-GVQEHTDADALTLMSQDN-VKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of CX671993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3O22_WHEAT2.909e-1634.04Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT4.962e-1634.04Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G2OX2_PEA4.962e-1630.86Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G3OX3_ARATH2.723e-1430.82Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ISP7_SCHPO2.157e-1129.03Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14D02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D02-G4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671993 ID=CX671993; Name=CX671993; organism=Citrus sinensis; type=EST; length=477bp
CAATAAGACTTGTTGCCGGACCCAATTCTCCATCTAATTTTAGGCTGTAA
AATGTAGCTAAAGATAATCTTTCCTTCACTGAGTTTACAGTTGCGCGATG
TTCAATACTAGGATAAGTTCCATTGGTTAATATCTCTAAAACGTCACCAA
TGTTGACTACAAAGGCATCCGGAAGGGGTTTAACAGCAACCCATTTTCCA
TCTTTCTTAATTTGGAGACCATCCATCTCATTGATTTGGAGGAGGACGGT
GAGTGCGGAGGCATCACAATGAGAATTATGGCCGACAACTTTTTCTGGTT
GCAGACAAGGAGGATAATAATTCATCCTGAATGCTTGCATCCCGTTTTCA
AACAACTCTTCCATATCATTGGGATCCATTCTTAGAGCTTTAGCCATTTG
GTCAAGGATTTTCAGGGTAAGATTTTTAATTTCTGTTGAGTAAACTTCCC
AGTCATCTCTGAATGGAAGAGGCAACT
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