CX671986

Overview
NameCX671986
Unique NameCX671986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1020..1772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.817e-63
Identity = 116/127 (91.34%), Postives = 124/127 (97.64%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            GYVAS SKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  311 GYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.084e-62
Identity = 115/127 (90.55%), Postives = 122/127 (96.06%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            GYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  311 GYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.084e-62
Identity = 115/127 (90.55%), Postives = 122/127 (96.06%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            GYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  311 GYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.452e-61
Identity = 114/127 (89.76%), Postives = 121/127 (95.28%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            G+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK V+KKDP+GA
Sbjct:  311 GFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGA 437          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.581e-50
Identity = 93/126 (73.81%), Postives = 112/126 (88.89%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRR+GK LE  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVG+IKSVDK D SG
Sbjct:  321 GNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 1.042e-49
Identity = 94/126 (74.60%), Postives = 109/126 (86.51%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G V  N+K+DP K A++FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAEI +KIDRRSGKELEK PK +K+GDA  V+M+P KPM VE F++Y PLGRFAVRDMRQTVAVG+IK+V KKD SG
Sbjct:  311 GNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.321e-49
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            GYVA +SK+DP K A++F +QVII+NHPGQI  GYAPVLDCHT+HIA KF E++ KIDRRSGK+LE  PKF+K+GDA  VK+IP KPMVVE FS YPPLGRFAVRDMRQTVAVGVIK+VD K+ SG
Sbjct:  323 GYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.321e-49
Identity = 92/126 (73.02%), Postives = 111/126 (88.10%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G V S+SK+DPAK A +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRRSGK+LE  PKF+K+GD+  VKMIP+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  321 GNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 87/126 (69.05%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E+L KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K + +G
Sbjct:  322 GNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.566e-48
Identity = 89/121 (73.55%), Postives = 107/121 (88.43%), Query Frame = -2
Query:  390 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 752
            G VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  322 GNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
The following BLAST results are available for this feature:
BLAST of CX671986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_MAIZE4.817e-6391.34Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A2_HORVU9.084e-6290.55Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU9.084e-6290.55Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_WHEAT3.452e-6189.76Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_SCHCO3.581e-5073.81Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_TRYBB1.042e-4974.60Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ORYLA2.321e-4973.81Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_ABSGL2.321e-4973.02Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_COCIM1.965e-4869.05Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_NEUCR2.566e-4873.55Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C09-E18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671986 ID=CX671986; Name=CX671986; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTATTTGAAAATGGCAAACTAGATAGAACATAAAACATCAACAAAC
AACATCTTAAGGAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAA
AATATCCAAGTTTGAACATGACATGGACAACAAAAATAGACTCAATACAG
TAATCTCGCCACCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCT
TGTCGATGGTGACGAATTGTAATTATAACCAGCAAATTGACGACCCAAAC
ATCCAACACATTTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGC
CTATAGACATTACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTT
CACAGCAGACTTGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGC
TCTTGATGACTCCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAA
CGACCAAGTGGGGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGT
GGGAATCATCTTAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCT
CCTTCTCCAGCTCCTTACCAGATCGCCTGTCAATCTTGGTCAAGATTTCA
GCAAACTTGACAGCTATGTGGGAAGTGTGGCAATCAAGAACAGGTGCATA
ACCGTTTCCAATCTGGCCAGGGTGGTTCATGATGATAACTTGGGAGGTGA
AGTTGGATGCCCCCTTGGCGGGATCGTCCTTGGAGTTAGATGCAACGTAA
CCA
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