CX671986

Overview
NameCX671986
Unique NameCX671986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 53/111 (47.75%), Postives = 80/111 (72.07%), Query Frame = -2
Query:  396 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 728
            ++P   A  FT+++I++ HP  + NGY PV+  HT+ +A + +E+++K+D R+G+E EK P+FLK GD   VK  P KP+ VE ++E+PPLGRFA+RDM +TV VG+I  V
Sbjct:  317 NNPPTVADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 427          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = -2
Query:  384 GYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            G VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT  +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  304 GDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = -2
Query:  384 GYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            G VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT  +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  304 GDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = -2
Query:  387 SNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 740
            + S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A +  E+ +KID ++GKE+EK P+FLK+GD+  VKM P K +VVE F E+P LGRFA+RDM +TV VGV+  V  K
Sbjct:  313 AGSLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  384 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 728
            D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F E+L K+D R+G+ +E+ P+FLK GDA  VK+ PTKPMV+E   E P LGRFA+RDM  T+A G+   V  K+
Sbjct:  313 DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  384 DPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 725
            +P   A++FT+Q++++ HP  + +GY PV   HT+ IA  FAEI  K++  +G+ LE+ P FLK GDA  VK+IPTKPMV+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = -2
Query:  384 GYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            G VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT+ +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTK MV+E   E P +GRFA+RDM QTVA G++ S+ K D
Sbjct:  304 GDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  408 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 752
            G VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F E+  K+D  +G+  E+ P FLK G+A FVK+ PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  292 GDVAGHVDDAPAV-AKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  387 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 728
            D P   A  F +QV++++HP  +  GY PV  CHT+ IA  F E++ K+D R+G+  E+ P FLK GDA  VK+ PT+PMV+E   E P LGRFAVRDM  T+A GV   +  K
Sbjct:  309 DVPPTVAEEFIAQVVVLHHPSALTVGYTPVFHCHTAQIACSFVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 58/115 (50.43%), Postives = 78/115 (67.83%), Query Frame = -2
Query:  396 SNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 740
            + S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + +EI ++ID ++GKE EK P+F+K GD+  VK  P K +V E F E+P LGRFA+RDM +TV VGVI  V
Sbjct:  313 AGSVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDV 427          
The following BLAST results are available for this feature:
BLAST of CX671986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_SULSO5.563e-2747.75Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_THEON1.239e-2644.80Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_THECE1.618e-2644.80Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_SULTO1.618e-2648.31Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_METJA1.618e-2647.83Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_METVA2.761e-2649.12Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_PYRKO3.606e-2644.80Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METS34.709e-2649.57Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METMJ4.709e-2648.25Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_SULAC6.150e-2650.43Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C09-E18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671986 ID=CX671986; Name=CX671986; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTATTTGAAAATGGCAAACTAGATAGAACATAAAACATCAACAAAC
AACATCTTAAGGAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAA
AATATCCAAGTTTGAACATGACATGGACAACAAAAATAGACTCAATACAG
TAATCTCGCCACCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCT
TGTCGATGGTGACGAATTGTAATTATAACCAGCAAATTGACGACCCAAAC
ATCCAACACATTTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGC
CTATAGACATTACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTT
CACAGCAGACTTGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGC
TCTTGATGACTCCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAA
CGACCAAGTGGGGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGT
GGGAATCATCTTAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCT
CCTTCTCCAGCTCCTTACCAGATCGCCTGTCAATCTTGGTCAAGATTTCA
GCAAACTTGACAGCTATGTGGGAAGTGTGGCAATCAAGAACAGGTGCATA
ACCGTTTCCAATCTGGCCAGGGTGGTTCATGATGATAACTTGGGAGGTGA
AGTTGGATGCCCCCTTGGCGGGATCGTCCTTGGAGTTAGATGCAACGTAA
CCA
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