CX671986

Overview
NameCX671986
Unique NameCX671986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  396 DPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 725
            +P   A  FT++VI++ HP  +  GY PV+  HT+ IA + +EI+ ++D ++GKE EK P+F+K G++  VK  P KP+ VE FS++PPLGRFA+RDM +TV VGVI  V
Sbjct:  318 NPPTVAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDV 427          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  387 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 728
            ++P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F E+  K+D RSG+  E+ P FLK GDA    + PT+P+V+ET  E P LGRFAVRDM  TVA G++ SV  K
Sbjct:  309 ENPPTVAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.032e-26
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = -2
Query:  384 DPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 725
            +P   A++FT+Q++++ HP  +  GY PV   HT+ IA  FAEI  K++  +G+ LE+ P FLK GDA  VK+IPTKPMV+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.032e-26
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  396 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 728
            D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA +  EI  K+D R+G+ +EK P+FLK GDA  VK  P KPMV+E +SE+P LGRFA+RDM +T+ +G++  V
Sbjct:  319 DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDV 429          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = -2
Query:  384 GYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            G VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT+ +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTK MV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  304 GDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  387 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 728
            D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F E+  K+D RSG+  E+ P FLK+GDA  V++ P++PMV+E+  E P LGRFA+RDM  T+A G+  +V  K
Sbjct:  309 DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 55/114 (48.25%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  387 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 728
            + P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F E+  K+D RSG+  E+ P FLK GDA  V++ PTKPMV+E   E P LGRFAVRDM  T+A G+  ++  K
Sbjct:  309 EQPPTVADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  396 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 728
            D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A    EI  K+D R+G   E+ P F+K GDA  + + PTKPMV+E   E P LGRFA+RDM  T+A G+ ++V
Sbjct:  311 DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 54/118 (45.76%), Postives = 79/118 (66.95%), Query Frame = -2
Query:  384 DDPAKGAS---NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 728
            D+PA   +    F +Q++++ HP  I  GY PV  CHT+ +A KF E++ KID  +G+ +E+ P FLK G+A  V++ PTKPMV+E  S  P LGRFA+RDM QTVA G+   ++K++
Sbjct:  306 DEPATVVTPDDTFIAQIVVLQHPSAITAGYTPVFHCHTAQVACKFEELIEKIDPATGEVIEENPDFLKTGEAAKVRIRPTKPMVIEEVSFIPQLGRFAIRDMGQTVAAGMCVKIEKEE 423          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  396 DDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 728
            D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  EI  K+D R+GK +E+ P+F+K GDA  V+  P KP+VVE +S++PPLGRFA+RDM +T+ +GV+  V
Sbjct:  318 DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDV 428          
The following BLAST results are available for this feature:
BLAST of CX671986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METS56.150e-2649.09Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_METLZ6.150e-2649.12Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METVS8.032e-2649.12Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_HYPBU8.032e-2647.75Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_THEGJ1.049e-2544.00Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_METPE1.049e-2547.37Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METB61.049e-2548.25Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METTP1.370e-2545.95Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METKA1.789e-2545.76Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_STAMF2.337e-2547.75Elongation factor 1-alpha OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C09-E18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671986 ID=CX671986; Name=CX671986; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTATTTGAAAATGGCAAACTAGATAGAACATAAAACATCAACAAAC
AACATCTTAAGGAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAA
AATATCCAAGTTTGAACATGACATGGACAACAAAAATAGACTCAATACAG
TAATCTCGCCACCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCT
TGTCGATGGTGACGAATTGTAATTATAACCAGCAAATTGACGACCCAAAC
ATCCAACACATTTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGC
CTATAGACATTACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTT
CACAGCAGACTTGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGC
TCTTGATGACTCCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAA
CGACCAAGTGGGGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGT
GGGAATCATCTTAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCT
CCTTCTCCAGCTCCTTACCAGATCGCCTGTCAATCTTGGTCAAGATTTCA
GCAAACTTGACAGCTATGTGGGAAGTGTGGCAATCAAGAACAGGTGCATA
ACCGTTTCCAATCTGGCCAGGGTGGTTCATGATGATAACTTGGGAGGTGA
AGTTGGATGCCCCCTTGGCGGGATCGTCCTTGGAGTTAGATGCAACGTAA
CCA
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