CX671986

Overview
NameCX671986
Unique NameCX671986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1020..1772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G VA +SK+DP KG  +F +QVI++NHPGQIG GYAPVLDCHT+HIA KF  ++ KIDRR+GK++E  PKF+K+GDA  VKM+P+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIKSV+K D +G
Sbjct:  322 GNVAGDSKNDPPKGCDSFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 89/121 (73.55%), Postives = 107/121 (88.43%), Query Frame = -2
Query:  390 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 752
            G VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  322 GNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 88/127 (69.29%), Postives = 107/127 (84.25%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            G VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D  GA
Sbjct:  320 GNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQGA 446          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 89/127 (70.08%), Postives = 108/127 (85.04%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            G VA +SK+DP  GA++FT+QVI+MNHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK  E  PKF+K+GD+  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+V+K   + A
Sbjct:  322 GNVAGDSKNDPPMGAASFTAQVIVMNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEKSSAAAA 448          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 89/126 (70.63%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            GYVAS+SK+DPAK  +NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF EI +K+DRRSGK LE+EPKF+K+G+A  V+M+P KPM VE F++YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  311 GYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 93/122 (76.23%), Postives = 105/122 (86.07%), Query Frame = -2
Query:  387 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 752
            G VA +SK+DP   A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE +PKFLK+GDA  V+MIP KPM VETFS+YPPLGRFAVRDMRQTVAVGVIK VDKK
Sbjct:  323 GNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.716e-48
Identity = 88/126 (69.84%), Postives = 111/126 (88.10%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  323 GDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 5.716e-48
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            GYVA +SK +P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRRSGK  E+ PKF+K+GDA  V ++P+KP+ VE F E+PPLGRFAVRDMRQTVAVGVIK+V+ KD SG
Sbjct:  323 GYVAGDSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.466e-48
Identity = 87/121 (71.90%), Postives = 107/121 (88.43%), Query Frame = -2
Query:  390 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 752
            G VA +SK+DP  G  +F +QVI++NHPGQ+GNGYAPVLDCHT+HIA KFAE+L KIDRR+GK +E +PKF+K+GDA  VKMIP+KPM VE+F+++PPLGRFAVRDMRQTVAVGVIKSV+K
Sbjct:  322 GNVAGDSKNDPPAGCDSFNAQVIVLNHPGQVGNGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = -2
Query:  375 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 752
            G VAS+SK+DPAK    FT+QVIIMNHPGQI  GY PVLDCHT+HIA KFAE+  K+DRRSGK++E  PK LK+GDAG + +IPTKP+ VETF+EYPPLGRFAVRDMRQTVAVGVIK+VDK +  G
Sbjct:  323 GSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          
The following BLAST results are available for this feature:
BLAST of CX671986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_YARLI3.351e-4869.84Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_SORMA3.351e-4873.55Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_AURPU3.351e-4869.29Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_TRIRE4.377e-4870.08Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_STYLE4.377e-4870.63Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A3_XENLA4.377e-4876.23Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_PIRIN5.716e-4869.84Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A1_DROME5.716e-4869.84Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_ASPOR7.466e-4871.90Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_ONCVO9.751e-4872.22Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C09-E18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671986 ID=CX671986; Name=CX671986; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTATTTGAAAATGGCAAACTAGATAGAACATAAAACATCAACAAAC
AACATCTTAAGGAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAA
AATATCCAAGTTTGAACATGACATGGACAACAAAAATAGACTCAATACAG
TAATCTCGCCACCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCT
TGTCGATGGTGACGAATTGTAATTATAACCAGCAAATTGACGACCCAAAC
ATCCAACACATTTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGC
CTATAGACATTACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTT
CACAGCAGACTTGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGC
TCTTGATGACTCCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAA
CGACCAAGTGGGGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGT
GGGAATCATCTTAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCT
CCTTCTCCAGCTCCTTACCAGATCGCCTGTCAATCTTGGTCAAGATTTCA
GCAAACTTGACAGCTATGTGGGAAGTGTGGCAATCAAGAACAGGTGCATA
ACCGTTTCCAATCTGGCCAGGGTGGTTCATGATGATAACTTGGGAGGTGA
AGTTGGATGCCCCCTTGGCGGGATCGTCCTTGGAGTTAGATGCAACGTAA
CCA
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