CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.331e-58
Identity = 113/179 (63.13%), Postives = 135/179 (75.42%), Query Frame = -1
Query:  307 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 843
            FKK GTYD K+L GVT LDVVRA TF A    +   EV+VPV+GGHAG+TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAKAG GSATLSMAYA A FADACL+GL G   V+EC++V STVTELPFFASKV+LG+  +E +  LGPL+++E+ GLEK K EL  SI+KG+ F
Sbjct:  165 FKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGLEKLKPELKASIEKGIQF 343          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.133e-57
Identity = 113/180 (62.78%), Postives = 139/180 (77.22%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK+G YD ++++GVT LDVVRA TF AE  GLD   VDVPVVGGHAGVTILPL SQ  P  +++   +D LT R Q+GGTEVV+AKAG GSATLSMAYAAA FAD+CLRGL G A V+EC YV STVT+ P+FASKV+L    +++I+ LGPL++YE+AGL+    EL  SI+KGV FV+
Sbjct:  193 KKMGVYDKRKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVTILPLFSQATPKATMSAEVLDALTKRTQDGGTEVVQAKAGKGSATLSMAYAAALFADSCLRGLNG-APVVECTYVESTVTDAPYFASKVKLSTEGVDKIHDLGPLSDYEKAGLKAMMPELLASIEKGVQFVK 371          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.786e-57
Identity = 112/181 (61.88%), Postives = 135/181 (74.59%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD K+L GVT LDVVRA TF A   G+   EV+VPVVGGHAG+TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAKAG GSATLSMAYA A FADACL GL G   V+EC+YV S++TELPFFASKVRLG+  +EE+  LGPL+++E+ GL++ K EL  SI+KG+ F  +
Sbjct:  158 KKAGVYDEKKLFGVTTLDVVRAKTFYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLKQLKPELKSSIEKGIKFANQ 338          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.607e-55
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = -1
Query:  298 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYV-ASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 843
            FKK GTY+ K+LLGVT LDVVRA TF A    +   EV+VPVVGGHAG+TILPL SQ  P  +L   +I  LT R Q+GGTEVVEAKAG GSATLSMAYA A FADACL+GL G   V+EC++V +S +TELPFFASKV+LG+  +EE+  LGP+++YE+ GLE    EL  SI+KG+ F  +
Sbjct:  165 FKKAGTYNEKKLLGVTTLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSIITELPFFASKVKLGKNGVEEVLELGPMSDYEKQGLEILIPELKASIEKGIKFANQ 347          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.908e-55
Identity = 112/183 (61.20%), Postives = 136/183 (74.32%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIY--SLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YDPK+L GVT LDVVRANTFV++   L   +VDVPV+GGHAG+TILPLLS+ KPS + T  EI  LT RIQN GTEVV+AKAGAGSATLSMAYAAA+F ++ LR L GD  V EC++V ST+T+LPFFAS+V++G+  +E +    L  L EYE+  LE  K EL  SI KGV+F  K
Sbjct:  214 KKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTEYEQKALEALKVELKASIDKGVAFANK 396          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.011e-52
Identity = 104/182 (57.14%), Postives = 127/182 (69.78%), Query Frame = -1
Query:  298 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 843
            FKK G YD K+L GVT LDVVR  T  A    +   EV+VP + GHAGVTILPL SQ  P   L+   +   T R Q+GGTEV EAKAG GSATLSMAYA A FADACL+GL G   V+EC+YV ST+TELPFFASKVRLG+  +EE+  LGPL+++E+ GLE  +  +  +I+KGV F  +
Sbjct:  160 FKKAGMYDEKKLFGVTTLDVVRVKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALTVTTKRTQDGGTEVEEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALRPGIKSTIEKGVKFANQ 341          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.173e-47
Identity = 96/180 (53.33%), Postives = 125/180 (69.44%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD +RL G+T LDV+R+ TFVAE+ G DP ++ VPV+GGH+GVTILPLLSQV+     T  E++ LT RIQN GTEVVEAKAG GSATLSM  AA +F  A +R L+G+  V+ECAYV       P+FA  V+LG+  +EE+ S G L+++E+A L+   + L G I  GV F +
Sbjct:  133 KKAGVYDKRRLFGITTLDVIRSETFVAELKGKDPSDIRVPVIGGHSGVTILPLLSQVE-GVEFTAEEVEALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVRALQGEEGVVECAYVEGDSEHAPYFAQPVKLGKEGVEEVLSYGELSDFEKAALDGMLETLNGDINIGVEFAK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.929e-46
Identity = 99/181 (54.70%), Postives = 132/181 (72.93%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVAS-TVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YDPKR+ GVT LDVVR+  FV+E+ G D  +  VPVVGGHAG+TI+PLLSQVKPS   +  EI  LT RIQ+ GTEVV AKAGAGSATLSMA A A+FA+A +RG++G+ +V +CAYVAS  V  + +F++ V LG   +E+I  +G ++ YE+  ++ +  EL  +I KGV+FV+
Sbjct:  160 KKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANALVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVSAYEQKLIDASVPELNKNIAKGVAFVK 339          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.098e-45
Identity = 95/180 (52.78%), Postives = 123/180 (68.33%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD ++L GVT LDV+R+ TFVAE+   DP +V VPV+GGH+GVTILPLLSQV+     T  E++ LT RIQN GTEVVEAKAG GSATLSM  AA +F  A +R L+G+  V+ECAYV        +FA  V+LG+  +EE+ S G L++YE++ L+   + L G I  GV F +
Sbjct:  133 KKAGVYDKRKLFGVTTLDVIRSETFVAELKDKDPGDVRVPVIGGHSGVTILPLLSQVE-GVEFTAEEVEALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVRALQGEEGVVECAYVEGDSEHASYFAQPVKLGKDGVEEVLSYGALSDYEKSALDGMLETLNGDINIGVEFAK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.434e-45
Identity = 97/180 (53.89%), Postives = 122/180 (67.78%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD +RL G+T LDV+R+ TFVAE+   DP ++ VPV+GGH+GVTILPLLSQV+     T  EI  LT RIQN GTEVVEAKAG GSATLSM  AA +F  A ++ L+G+ +VIECAYV       PFFA  V+LG+   E I S G L+++ER  L+   + L G I+ GV F +
Sbjct:  133 KKAGVYDKRRLFGITTLDVIRSETFVAELKDKDPGDIRVPVIGGHSGVTILPLLSQVE-GVEFTDEEIAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVKALQGEENVIECAYVEGEGEHAPFFAQPVKLGKEGAEAILSYGELSDFERNALDSMLETLNGDIEIGVEFAK 311          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDHM_CITLA7.331e-5863.13Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM_CHLRE2.133e-5762.78Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHM_FRAAN2.786e-5761.88Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_EUCGU2.607e-5560.66Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHP_ARATH9.908e-5561.20Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_BRANA6.011e-5257.14Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDH_VIBPA1.173e-4753.33Malate dehydrogenase OS=Vibrio parahaemolyticus GN... [more]
MDHM_CAEEL4.929e-4654.70Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDH_VIBHB1.098e-4552.78Malate dehydrogenase OS=Vibrio harveyi (strain ATC... [more]
MDH_VIBSL1.434e-4553.89Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
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