CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_HAEIN (Malate dehydrogenase OS=Haemophilus influenzae GN=mdh PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.306e-42
Identity = 93/179 (51.96%), Postives = 120/179 (67.04%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L GVT LDV+R+ TFVAE+ GL+     VPV+GGH+GVTILPLLSQV+        EI+ LT RIQN GTEV+ AKAG GSATLSMA AAA+FA + ++GL G+ +V+EC YV        FF+  VRLG+  +EEI  +GPL+ +E+  LE     L   I+ G  F+
Sbjct:  133 KKAGVYDKRKLFGVTTLDVLRSETFVAELKGLNVSRTSVPVIGGHSGVTILPLLSQVQ-YAKWNEDEIEPLTKRIQNAGTEVLNAKAGGGSATLSMAQAAARFARSLVKGLSGE-TVVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALENMLPTLRADIELGEKFI 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.306e-42
Identity = 90/180 (50.00%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQV    S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV S      FFA  + LG+  + E   +G L+ +E+  L      L   I+ G +F++
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQVS-GISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGENGVVECAYVESDGKHARFFAQPILLGKDGVAERKDIGTLSAFEQNALSSMLDTLKQDIELGETFIK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 90/179 (50.28%), Postives = 119/179 (66.48%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K+ G YD ++L G+T LDV+R+ TFV+E+ G+   +V+VPV+GGH+GVTILPLLSQVK     T  EI  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  ++EC YV        FFA  V LG+  +EE+ + G L+E+E    +   +EL  +I  G  FV
Sbjct:  133 KQAGVYDKRKLFGITTLDVIRSETFVSELKGISLADVEVPVIGGHSGVTILPLLSQVK-GVEFTAEEIATLTPRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEEGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFETNARDAMLEELKANITLGEEFV 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 90/179 (50.28%), Postives = 119/179 (66.48%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K+ G YD ++L G+T LDV+R+ TFV+E+ G+   +V+VPV+GGH+GVTILPLLSQVK     T  EI  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  ++EC YV        FFA  V LG+  +EE+ + G L+E+E    +   +EL  +I  G  FV
Sbjct:  133 KQAGVYDKRKLFGITTLDVIRSETFVSELKGISLADVEVPVIGGHSGVTILPLLSQVK-GVEFTAEEIATLTPRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEEGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFEANARDAMLEELKANITLGEEFV 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TF+AE+ GL+  +V + V+GGH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFIAELKGLNVADVKINVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TF+AE+ GL+  +V V V+GGH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TF+AE+ GL+  +V V V+GGH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TF+AE+ GL+  +V V V+GGH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEPC (Malate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TF+AE+ GL+  +V + V+GGH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFIAELKGLNVADVKINVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TF+AE+ GL+  +V + V+GGH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFIAELKGLNVADVKINVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_HAEIN3.306e-4251.96Malate dehydrogenase OS=Haemophilus influenzae GN=... [more]
MDH_ERWCT3.306e-4250.00Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_VIBMA4.318e-4250.28Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_MORJA4.318e-4250.28Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_SHESW5.639e-4250.56Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]
MDH_SHESR5.639e-4250.56Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESM5.639e-4250.56Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESA5.639e-4250.56Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]
MDH_SHEPC5.639e-4250.56Malate dehydrogenase OS=Shewanella putrefaciens (s... [more]
MDH_SHEON5.639e-4250.56Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
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