CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 93/179 (51.96%), Postives = 119/179 (66.48%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L GVT LDV+R+ TFVAE+ GL+     VPV+GGH+GVTILPLLSQV+        EI+ L  RIQN GTEVV AKAG GSATLSMA AAA+FA + ++GL G+ +V+EC YV        FF+  VRLG+  +EEI  +GPL+ +E+  LE     L   I+ G  F+
Sbjct:  133 KKAGVYDKRKLFGVTTLDVLRSETFVAELKGLNVSRTSVPVIGGHSGVTILPLLSQVQ-YAKWNEDEIEPLAKRIQNAGTEVVNAKAGGGSATLSMAQAAARFARSLVKGLSGE-TVVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALENMLPTLRADIELGEKFI 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 90/180 (50.00%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            K  G YD  RL GVT LDV+R+ TFVAE  GL+  +V+V V+GGH+GVTILPLLSQ++   S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  + LG+  +E++ + G ++E+E    +     L   I+ GV FV+
Sbjct:  133 KAAGVYDKNRLFGVTTLDVIRSETFVAEAKGLNVADVNVNVIGGHSGVTILPLLSQIE-GVSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPILLGKNGVEKVLAYGDVSEFEANARDAMLDTLNADIKLGVEFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            K  G YD  RL GVT LDV+R+ TFVAE  GL+  +V V V+GGH+GVTILPLLSQ++   S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  IE++ + G ++E+E    +     L   I  GV FV+
Sbjct:  133 KAAGVYDKNRLFGVTTLDVIRSETFVAEAKGLNVADVKVNVIGGHSGVTILPLLSQIE-GVSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHADFFAQPVLLGKNGIEQVLAYGEVSEFEANARDAMLDTLKADITLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEB9 (Malate dehydrogenase OS=Shewanella baltica (strain OS195) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 90/180 (50.00%), Postives = 119/180 (66.11%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL G+T LDV+R+ TF+AE+  L+  +V V V+GGH+GVTILPLLSQV+   + T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+  IE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KKAGVYDKNRLFGITTLDVIRSETFIAELKSLNVADVKVNVIGGHSGVTILPLLSQVE-GVTFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PHOPR (Malate dehydrogenase OS=Photobacterium profundum GN=mdh PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 89/181 (49.17%), Postives = 114/181 (62.98%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD +RL G+T LD++R+ TFVAE+ G  P ++ VPV+GGH+GVTILPLLSQV+     +  EI  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +R L+G+  ++ECAYV        FFA  V LG+  +EE+   G L+ +E+  L      L   I  G  F  K
Sbjct:  133 KKAGVYDKRRLFGITTLDIIRSETFVAELKGKTPSDIQVPVIGGHSGVTILPLLSQVE-GVEFSDEEIKALTPRIQNAGTEVVEAKAGGGSATLSMGQAAYRFGLSLVRALQGEQGIVECAYVEGDGKHARFFAQPVLLGKDGVEEVIDYGKLSTFEQEALNNMLDTLTSDITLGEEFAAK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L GVT LDV+R+ TFVAE+ GL+   + VPV+GGH+GVTILPLLSQV+ +      EI  LT RIQN GTEVVEAKAG GSATLSMA AAA+FA + ++GL G+ +V+EC YV        FFA  VRLG+  +EEI  +G L+ +E+  LE     L   I+ G  FV
Sbjct:  133 KKAGVYDKRKLFGVTTLDVLRSETFVAELKGLNVSRIAVPVIGGHSGVTILPLLSQVQYT-EWKEDEIAPLTKRIQNAGTEVVEAKAGGGSATLSMAQAAARFALSLVQGLSGE-TVVECTYVEGDGKYARFFAQPVRLGKEGVEEILPVGTLSAFEQKALEDMLPTLRADIELGEKFV 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 96/179 (53.63%), Postives = 120/179 (67.04%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L GVT LDV+R+ TFVAE+ GL+   + VPV+GGH+GVTILPLLSQV+        EI  LT RIQN GTEVVEAKAG GSATLSMA AAA+FA + ++GL G+ +V+EC YV        FFA  VRLG+  +EEI  +G L+ +E+  LE     L   I+ G  FV
Sbjct:  133 KKAGVYDKRKLFGVTTLDVLRSETFVAELKGLNVSRIAVPVIGGHSGVTILPLLSQVQ-YAEWEEDEIAPLTKRIQNAGTEVVEAKAGGGSATLSMAQAAARFALSLVQGLSGE-TVVECTYVEGDGKYARFFAQPVRLGKEGVEEILPVGTLSAFEQKALEDMLPTLRADIELGEKFV 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 90/180 (50.00%), Postives = 116/180 (64.44%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  +L GVT LDV+R+ TFVAE+ G +P E+ VPV+GGH+GVTILPLLSQV+     T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + ++ L G+  V+ECAYV        FFA  + LG+  +EEI   G L+ +E+  L+     L   I+ G  F++
Sbjct:  133 KKAGVYDKNKLFGVTTLDVIRSETFVAELKGKNPGEICVPVIGGHSGVTILPLLSQVE-GVEFTAEEVAALTPRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVKALSGEKGVVECAYVEGNGEHARFFAQPILLGKNGVEEIQHYGELSTFEQDALDSMLDTLKADIKIGEEFIK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.799e-41
Identity = 88/180 (48.89%), Postives = 119/180 (66.11%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            K  G YD  RL G+T LDV+R+ TF+AE+ GL+  +V V V+GGH+GVTILPLLSQV+   + T  E+  +T RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  + LG+  +E++   G ++ +E    +     L G I+ GV FV+
Sbjct:  133 KNAGVYDKNRLFGITTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVE-GVTFTDEEVAAMTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHATFFAQPILLGKNGVEKVLPYGEISAFEANARDAMLDTLKGDIKLGVEFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SALMU (Malate dehydrogenase (Fragment) OS=Salmonella muenchen GN=mdh PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.799e-41
Identity = 89/162 (54.94%), Postives = 113/162 (69.75%), Query Frame = -1
Query:  355 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLE 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  L+
Sbjct:  122 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKDVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 282          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_HAEI85.639e-4251.96Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_SHEWM1.641e-4150.00Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHELP1.641e-4151.11Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_SHEB91.641e-4150.00Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_PHOPR1.641e-4149.17Malate dehydrogenase OS=Photobacterium profundum G... [more]
MDH_HAES21.641e-4153.63Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_HAES11.641e-4153.63Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_ALISL1.641e-4150.00Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDH_SHEFN2.799e-4148.89Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_SALMU2.799e-4154.94Malate dehydrogenase (Fragment) OS=Salmonella muen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
back to top