CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.799e-41
Identity = 93/180 (51.67%), Postives = 121/180 (67.22%), Query Frame = -1
Query:  304 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 843
            FKK GTYD KR+ G+T LDV+R+  FVAE+ G+D   V VPV+GGH+G TILPLLSQV+   S T  E+  LT RIQN GTEVV AKAG GSATLSM  AAA+F  + ++GL+G+  V++ AYVA    +  +FA  VRLG+  +EEI S G L+ +E        + L   I++GV F+
Sbjct:  132 FKKAGTYDAKRVFGITTLDVIRSEAFVAELKGVDVATVKVPVIGGHSGTTILPLLSQVE-GVSFTDEEVAALTPRIQNAGTEVVNAKAGGGSATLSMGAAAARFCMSLVKGLQGE-DVVDYAYVAVENGDAEYFAHPVRLGKNGVEEILSYGELSAFETKAKNDMLETLKKDIKEGVDFM 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TFVA   GL+  +V V V+GGH+GVTILPLLSQ++   S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  +E++ + G ++ +E    +     L   I  G+ FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFVAAAKGLNVADVKVNVIGGHSGVTILPLLSQIE-GVSFTDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEQVLAYGDVSAFEANARDAMLDTLKADIDLGIEFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K+ G YD ++L G+T LDV+R+ TFV+ + G+   +V+VPV+GGH+GVTILPLLSQVK     T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  ++EC YV        FFA  V LG+  +EE+ + G L+E+E    +   +EL  +I  G  FV
Sbjct:  133 KQAGVYDKRKLFGITTLDVIRSETFVSALKGISLADVEVPVIGGHSGVTILPLLSQVK-GVEFTAEEVVALTARIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFETNARDAMLEELKANITLGEEFV 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_HAEPS (Malate dehydrogenase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=mdh PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 95/181 (52.49%), Postives = 117/181 (64.64%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV--KPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L GVT LDV+R+ TFVAE+ G D  +V VPV+GGH+GVTILPLLSQ   +     T  E+  LT RIQN GTEVVEAKAG GSATLSMA AAA+FA + L+GL G+  V+E AYV        FFA  VRLG   +EE+  +G L+ YE   ++     L   I+ G  FV
Sbjct:  133 KKAGVYDKRKLFGVTSLDVLRSETFVAELKGKDVNDVKVPVIGGHSGVTILPLLSQAFEEDKIDFTAEEVAALTKRIQNAGTEVVEAKAGGGSATLSMAQAAARFARSVLKGLTGE-QVVEYAYVEGNGEYARFFAQPVRLGLNGVEELLPIGTLSAYEEEAVQAMIPTLKADIELGEKFV 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 94/180 (52.22%), Postives = 118/180 (65.56%), Query Frame = -1
Query:  304 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 843
            FKK GTYD  RL GVT LDV+R+  FVAE+ GLD   V VPV+GGH+G TILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + ++GL+G+  V++ AYV     +  FFA  VRLG   + EI   G L+ +E+   E     L   IQ+GV F+
Sbjct:  132 FKKAGTYDAARLFGVTTLDVIRSEAFVAELKGLDVATVKVPVIGGHSGTTILPLLSQVE-GATFSDEEVAALTPRIQNAGTEVVEAKAGGGSATLSMGAAAARFCMSLVKGLQGE-DVVDYAYVEGNGADAQFFAQPVRLGVNGVSEILPYGELSAFEQKAKEDMLATLKKDIQEGVDFM 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 89/180 (49.44%), Postives = 117/180 (65.00%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            K  G YD  RL GVT LDV+R+ TF+AE  GL+  +V + V+GGH+GVTILPLLSQV+   S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+ +VIECAYV        FFA  + LG+  +E + + G ++E+E    +     L   I+ GV FV+
Sbjct:  133 KAAGVYDKNRLFGVTTLDVIRSETFIAEAKGLNVDDVKINVIGGHSGVTILPLLSQVQ-GVSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEENVIECAYVDGGSEHADFFAQPILLGKNGVESVLAYGEVSEFEANARDAMLDTLKADIKLGVEFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_MORS2 (Malate dehydrogenase OS=Moritella sp. (strain 2D2) GN=mdh PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.814e-40
Identity = 87/179 (48.60%), Postives = 117/179 (65.36%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K+ G YD ++L G+T LDV+R+ TFV+ + G+   +V VPV+GGH+G TILPLLSQVK     T  EI  LT RIQN GTEVVEAKAG GSATLSM +AAA+F  + +R L+G+  ++EC YV        FFA  V LG+  +EE+ + G L+++E    +   +EL  +I  G  FV
Sbjct:  133 KQAGVYDKRKLFGITTLDVIRSETFVSALKGISLADVAVPVIGGHSGATILPLLSQVK-GVEFTAEEIATLTTRIQNAGTEVVEAKAGGGSATLSMGHAAARFGLSLVRALQGEKGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGDLSDFETNARDAMLEELKANITLGEEFV 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.536e-39
Identity = 88/179 (49.16%), Postives = 112/179 (62.57%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L G+T LD +R+  F+ +   ++    D+ V+GGH+GVTILPLLSQ+ P    T  E+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F  +  R L G+  + ECAY+        FFA  VRLG+  +EEI  LG L+ +E+  LE     L   I  GV FV
Sbjct:  133 KKAGVYDKRKLFGITTLDTIRSEKFIVQAKNIEINRNDISVIGGHSGVTILPLLSQI-PHVEFTEQELKDLTHRIQNAGTEVVEAKAGAGSATLSMAYAAMRFVVSMARALNGEV-ITECAYIEGDGKFARFFAQPVRLGKNGVEEILPLGTLSAFEQQALEAMLPTLQTDIDNGVKFV 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.835e-39
Identity = 89/179 (49.72%), Postives = 116/179 (64.80%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K  G Y+  +L GVT LDV+RA TFV  +  L+P  V VPV+GGH+G TILPLLSQV+     T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +  +RG+ +V+E  YV +   +  FF+  VRLG+  +EEI   G L+++E+   E   + L G I+ GV FV
Sbjct:  133 KAKGVYNKNKLFGVTTLDVIRAETFVGNLRDLNPANVHVPVIGGHSGTTILPLLSQVE-GVEFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAAARFCLSLVSAMRGE-NVVEYTYVETNSDDAQFFSHPVRLGKNGVEEILPYGELSDFEQKAKESMLEGLRGDIKLGVEFV 309          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.202e-37
Identity = 89/182 (48.90%), Postives = 119/182 (65.38%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTE---LPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            ++VG + PK L GVT LD VRA+ F ++V       + +PVVGGH+G TI+PLLSQ      LT  + D L  RIQ GG EVV+AKAGAGSATLSMAYA A+ A + LR L G++ V EC +V S + +   + FFAS+V LG+  ++ I+ +G +N+YE + L+ A  EL  SI KG  FV
Sbjct:  161 ERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVPLLSQ--GGVELTGEKRDALIHRIQFGGDEVVKAKAGAGSATLSMAYAGARMASSVLRALAGESGVEECTFVESPLYKDQGIDFFASRVTLGKDGVDTIHPVGKINDYEESLLKVALGELKKSITKGEQFV 340          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_PSEHT2.799e-4151.67Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_SHEPW4.774e-4150.00Malate dehydrogenase OS=Shewanella piezotolerans (... [more]
MDH_MORS54.774e-4149.16Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]
MDH_HAEPS4.774e-4152.49Malate dehydrogenase OS=Haemophilus parasuis serov... [more]
MDH_COLP34.774e-4152.22Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_SHESH1.389e-4049.44Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_MORS21.814e-4048.60Malate dehydrogenase OS=Moritella sp. (strain 2D2)... [more]
MDH_ACTSZ1.536e-3949.16Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_PSEA65.835e-3949.72Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDHM_SCHPO3.202e-3748.90Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
back to top