CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_HAEDU (Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 95/184 (51.63%), Postives = 113/184 (61.41%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL---TPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTE--LPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            +K G YD  +L GVT LDVVRA TFV+E+   +   V VPVVGGH+G TILPLLSQ      L   + TEI+ LT RI+N GTEVVEAKAG GSATLSMA + A+FA A  + L G+   +  AYV S        FFA  VR G   IEEI  + PLNEYE+   E+ K  L   I+ G  FV
Sbjct:  140 RKAGVYDKSKLFGVTTLDVVRAKTFVSELKHKNVETVTVPVVGGHSGTTILPLLSQALAEGRLLDFSQTEIESLTQRIKNAGTEVVEAKAGGGSATLSMAESGARFALAVFKALLGE-DCVRYAYVQSKEGSGYPEFFAHPVRFGLKGIEEILPIAPLNEYEQTQFEELKPILEADIELGKKFV 322          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 90/180 (50.00%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVT-ELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K  G YD  +L GVT LDV+RA TFVAE+  +D   V VPV+GGH+G TILPLLSQV+     T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +  ++G+ +V+E  YV +  + +  FFA  VRLG   +EEI   G L+ +E        + L G I+ GV FV
Sbjct:  133 KAKGVYDKNKLFGVTTLDVIRAETFVAELKDVDVSSVHVPVIGGHSGTTILPLLSQVE-GVEFTDEEVSSLTTRIQNAGTEVVEAKAGGGSATLSMGQAAARFCLSLVAAMQGE-NVVEYTYVQTDDSDDAAFFAHPVRLGANGVEEILPYGELSAFEEKAKNDMLEGLRGDIKLGVDFV 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 88/182 (48.35%), Postives = 121/182 (66.48%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTE---LPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            K  G Y+PK+L GVT LD +RA  F++EV   DP +  V V+GGH+G+TI+PL+SQ      ++  +   L  RIQ GG EVV+AK GAGSATLSMA+A AKFA+A L G +G+  VIE ++V S + +   + FFAS V LG   IE+I+ +G L+  E   L+K K+ L  +I+KGV+FV
Sbjct:  151 KNKGVYNPKKLFGVTTLDSIRAARFISEVENTDPTQERVNVIGGHSGITIIPLISQTNHKL-MSDDKRHELIHRIQFGGDEVVKAKNGAGSATLSMAHAGAKFANAVLSGFKGERDVIEPSFVDSPLFKSEGIEFFASPVTLGPDGIEKIHPIGELSSEEEEMLQKCKETLKKNIEKGVNFV 331          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PSYIN (Malate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=mdh PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 84/181 (46.41%), Postives = 111/181 (61.33%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            K  G Y+  +L G+T LDV+RA  FVAE+ GL   +V V V+GGH+G TILP+LSQ++   S T  E+  LT RIQN GTEVVEAKAG GSATLSMA AA++FA   +  L G   +I+ AYV       PFF   + LG+  I+++   G L+ +E    E+    L   I+ G+ FV K
Sbjct:  133 KAAGVYNKNKLFGITTLDVIRAEEFVAELKGLPSEDVRVNVIGGHSGTTILPVLSQIQ-GVSFTDQEVIDLTSRIQNAGTEVVEAKAGGGSATLSMACAASRFAIQLVHALSGKQGIIQNAYVDGGNPASPFFTQPLLLGKNGIDKVLPYGELSSFEETKKEEMLSVLHADIEMGIDFVSK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ACTPJ (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mdh PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.039e-36
Identity = 92/184 (50.00%), Postives = 113/184 (61.41%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS---CSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTE--LPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            +K G YD ++L GVT LDVVRA TF +E+       V VPV+GGH+G TILPLLSQ        S T  EI+ LT RIQN GTEVVEAKAG GSATLSMA + A+FA A  + L G+   +  AYV S        FFA  VR G   +EE+  +G L+EYE+A L++ K  L   I  G +FV
Sbjct:  133 RKAGVYDKRKLFGVTTLDVVRAKTFTSELKEKHVETVKVPVIGGHSGPTILPLLSQALSEGLPLSFTQEEIEALTYRIQNAGTEVVEAKAGGGSATLSMAESGARFAVAVFKALLGE-DCVRYAYVESKEGSGYPEFFAHPVRFGLTGVEELLPIGKLSEYEQAKLDELKPVLEADIALGKNFV 315          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ACTP7 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=mdh PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.039e-36
Identity = 92/184 (50.00%), Postives = 113/184 (61.41%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS---CSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTE--LPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            +K G YD ++L GVT LDVVRA TF +E+       V VPV+GGH+G TILPLLSQ        S T  EI+ LT RIQN GTEVVEAKAG GSATLSMA + A+FA A  + L G+   +  AYV S        FFA  VR G   +EE+  +G L+EYE+A L++ K  L   I  G +FV
Sbjct:  133 RKAGVYDKRKLFGVTTLDVVRAKTFTSELKEKHVETVKVPVIGGHSGPTILPLLSQALSEGLPLSFTQEEIEALTYRIQNAGTEVVEAKAGGGSATLSMAESGARFAVAVFKALLGE-DCVRYAYVESKEGSGYPEFFAHPVRFGLTGVEELLPIGKLSEYEQAKLDELKPVLEADIALGKNFV 315          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ACTP2 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mdh PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.757e-35
Identity = 92/184 (50.00%), Postives = 112/184 (60.87%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS---CSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTE--LPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            +K G YD ++L GVT LDVVRA TF +E+       V VPV+GGH+G TILPLLSQ        S T  EI+ LT RIQN GTEVVEAKAG GSATLSMA + A+FA A  + L G+   +  AYV S        FFA  VR G   +EE+  +G L+EYE+A L + K  L   I  G +FV
Sbjct:  133 RKAGVYDKRKLFGVTTLDVVRAKTFTSELKEKHVETVKVPVIGGHSGPTILPLLSQALSEGLPLSFTQEEIEALTYRIQNAGTEVVEAKAGGGSATLSMAESGARFAVAVFKALLGE-DCVRYAYVESKEGSGYPEFFAHPVRFGLTGVEELLPIGKLSEYEQAKLGELKPVLEADIALGKNFV 315          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.295e-35
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = -1
Query:  472 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYV 840
            KK G YD  +L GVT LD++R+NTFVAE+ G    EV+VPV+GGH+GVTILPLLSQ+ P  S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R ++G+  V+ECAYV
Sbjct:  103 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYV 224          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_KLEOX (Malate dehydrogenase (Fragment) OS=Klebsiella oxytoca GN=mdh PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 74/123 (60.16%), Postives = 93/123 (75.61%), Query Frame = -1
Query:  472 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYV 840
            KK G YD  +L GVT LD++R+NTFVAE+ G    +V+VPV+GGH+GVTILPLLSQ+ P  S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R ++G+  V+ECAYV
Sbjct:   98 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKSSSDVEVPVIGGHSGVTILPLLSQI-PGVSFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYV 219          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_KLETE (Malate dehydrogenase (Fragment) OS=Klebsiella terrigena GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.328e-34
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = -1
Query:  472 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYV 840
            KK G YD  +L GVT LD++R+NTFVAE+ G    +V+VPV+GGH+GVTILPLLSQ+    S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R ++G+  V+ECAYV
Sbjct:  100 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKSSSDVEVPVIGGHSGVTILPLLSQI-AGVSFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYV 221          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_HAEDU5.462e-3751.63Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh... [more]
MDH_ALTMD5.462e-3750.00Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDHM_YEAST5.462e-3748.35Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_PSYIN3.540e-3646.41Malate dehydrogenase OS=Psychromonas ingrahamii (s... [more]
MDH_ACTPJ6.039e-3650.00Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP76.039e-3650.00Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP21.757e-3550.00Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_KLEVA2.295e-3560.98Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEOX5.112e-3560.16Malate dehydrogenase (Fragment) OS=Klebsiella oxyt... [more]
MDH_KLETE4.328e-3459.35Malate dehydrogenase (Fragment) OS=Klebsiella terr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
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