CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:16..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PECCC (Malate dehydrogenase (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  553 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSM 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQV P  S +  E+  LT RIQN GTEVVEAKAG GSATLSM
Sbjct:   55 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQV-PGISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 149          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBMI (Malate dehydrogenase (Fragment) OS=Vibrio mimicus GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.262e-25
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = -1
Query:  553 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSM 840
            KK G YD ++L GVT LDV+R+ TFVA +   DP +V VPV+GGH+GVTILPLLSQV+   + T  E+  LT RIQN GTEVVEAKAG GSAT SM
Sbjct:  126 KKAGVYDKRKLFGVTTLDVIRSETFVAALKDKDPGQVRVPVIGGHSGVTILPLLSQVE-GVTFTDEEVAALTKRIQNAGTEVVEAKAGGGSATFSM 220          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 57/120 (47.50%), Postives = 74/120 (61.67%), Query Frame = -1
Query:  475 KRLLGVTMLDVVRANTFVAEV---LGLDPRE---VDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAY 816
            +R++GVT LD+VRA+TF+ E+    GL PR     DVPV+GGH+G TI+PL SQ      L   ++ YL  R+Q GG EVV+AK G GSATLSMA+A  K     +  L G+   I   Y
Sbjct:  173 RRIMGVTKLDIVRASTFLREINIESGLTPRVNSMPDVPVIGGHSGETIIPLFSQSNFLSRLNEDQLKYLIHRVQYGGDEVVKAKNGKGSATLSMAHAGYKCVVQFVSLLLGNIEQIHGTY 292          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 68/207 (32.85%), Postives = 103/207 (49.76%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-----------VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIEC---------------AYVASTVTELPFFASKVRLGRARIEEIYS--LGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK+G + P  ++GVT LD+VRA TF+ + L L   ++            V V+GGH+G TI+P+++  K        + ++   R+Q GG E+V+AK GAGSATLSMA+A AKFA+  LR    +    E                A        + +F+  + L    +  I +  L  L+  E   +  A KEL  +I+KG SF+
Sbjct:  132 KKMGKFKPGNVMGVTNLDLVRAETFLVDYLMLKNPKIGQEQDKTTMHRKVTVIGGHSGETIIPIITD-KSLVFQLDKQYEHFIHRVQFGGDEIVKAKQGAGSATLSMAFAGAKFAEEVLRSFHNEKPETESLSAFVYLPGLKNGKKAQQLVGDNSIEYFSLPIVLRNGSVVSIDTSVLEKLSPREEQLVNTAVKELRKNIEKGKSFI 337          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_PECCC2.717e-2865.63Malate dehydrogenase (Fragment) OS=Pectobacterium ... [more]
MDH_VIBMI1.262e-2563.54Malate dehydrogenase (Fragment) OS=Vibrio mimicus ... [more]
MDHC_YEAST3.011e-1947.50Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]
MDHP_YEAST5.136e-1932.85Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
back to top