CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:16..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.434e-45
Identity = 96/179 (53.63%), Postives = 124/179 (69.27%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD  RL GVT LDV+R+NTFVAE+ G  P+E++VPV+GGH+GVTILPLLSQ+ P  + T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+   + +RGL+G++ V+ECAYV        FFA  VRLG+  +EE  ++G L+++E+  LE     L   I+ G  F+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSNTFVAELKGKKPQEIEVPVIGGHSGVTILPLLSQI-PGVNFTDGELAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAARLGLSLVRGLQGESDVVECAYVEGDGKYARFFAQPVRLGKNGVEERLNIGELSDFEQKALEGMLDVLRKDIELGEKFI 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.172e-45
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = -1
Query:  301 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 843
            FKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   V+EC++V S  T+ P+F++ + LG+  IE+   +G ++ +E   + +A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 335          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.449e-45
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = -1
Query:  301 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 843
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   V+EC++V S  TE  +F++ + LG+  IE+   +G ++ +E   +  A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFVK 335          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 5.449e-45
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = -1
Query:  301 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 843
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   V+EC++V S  TE  +F++ + LG+  IE+   +G ++ +E   +  A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFVK 335          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.295e-45
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = -1
Query:  301 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 843
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   VIEC++V S  TE  +F++ + LG+  +E+   +G +  +E   + +A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVK 335          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.295e-45
Identity = 91/181 (50.28%), Postives = 122/181 (67.40%), Query Frame = -1
Query:  301 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 843
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   V+EC++V S  TE  +F++ + LG+  IE+   +G +  +E   +  A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPSKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGQIPSFEEKMISDAIPELKASIKKGEDFVK 335          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.214e-44
Identity = 96/181 (53.04%), Postives = 122/181 (67.40%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P E++VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  LE     L   IQ G +FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPDEIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGKLSAFEQNALEGMLDTLKKDIQLGEAFVNK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.214e-44
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = -1
Query:  301 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 843
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   V+EC++V S  TE  +F++ + LG+  +E+   +G +  +E   + +A  EL  SI+KG  FV+
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVK 335          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.585e-44
Identity = 97/181 (53.59%), Postives = 117/181 (64.64%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD KRL GVT LD++RANTFVAE+ G DP+  +VPV+GGH+GVTILPLLSQV    S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L G+  VIEC Y         FFA  VRLG+  +EE   +G L+++E+  L      L   I  G  F+ K
Sbjct:  133 KKAGVYDKKRLFGVTTLDIIRANTFVAELKGKDPQTTNVPVIGGHSGVTILPLLSQVA-GVSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLIRALNGEKDVIECTYTEGDGEHARFFAQPVRLGKNGVEEYLPIGQLSDFEKQSLNGMLDVLKKDIILGEEFINK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.071e-44
Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G Y+P +L GVT LD++R+NTFV E+  LDP  +D+PV+GGH+GVTILPLLSQ+ P  SL+  E+  LT RIQN GTEVVEAKAG GSATL+M  AAA+FA + +R ++GD +V+EC YV S      FFA  + LG+A + +  S+G L+ +E+  LE   + L   I  G  F+ K
Sbjct:  133 KKAGVYNPNKLFGVTTLDIIRSNTFVGELKHLDPATLDIPVIGGHSGVTILPLLSQI-PGVSLSEREVAELTKRIQNAGTEVVEAKAGGGSATLAMGQAAARFALSLVRAMQGDENVVECGYVESDGEYARFFAQPLLLGKAGLVQRLSIGTLSAFEQDALESMLEVLRKDIALGEDFINK 312          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_PHOLL1.434e-4553.63Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDHM_PIG4.172e-4549.72Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_PONAB5.449e-4550.28Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_HUMAN5.449e-4550.28Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHM_RAT9.295e-4550.28Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_MACFA9.295e-4550.28Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDH_ESCF31.214e-4453.04Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDHM_MOUSE1.214e-4449.72Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDH_PROMH1.585e-4453.59Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_EDWI92.071e-4451.38Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
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