CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:16..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.990e-43
Identity = 95/181 (52.49%), Postives = 120/181 (66.30%), Query Frame = -1 
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P +V+VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTDVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKDVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGKLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.905e-43
Identity = 94/180 (52.22%), Postives = 117/180 (65.00%), Query Frame = -1 
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  +L GVT LDV+R+ TFVAE+   DP E+ VPV+GGH+GVTILPLLSQV+     T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + ++ L G+  V+ECAYV        FFA  + LG+  +EEI S G L+ +E+  LE     L G I+ G  FV+
Sbjct:  133 KKAGVYDKNKLFGVTTLDVIRSETFVAELKDKDPGEIRVPVIGGHSGVTILPLLSQVE-GVEFTAEEVAALTPRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVKALSGEQGVVECAYVEGNGEHARFFAQPILLGKNGVEEIQSYGELSAFEQEALESMLDTLRGDIKIGEEFVQ 311
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.905e-43
Identity = 94/180 (52.22%), Postives = 117/180 (65.00%), Query Frame = -1 
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  +L GVT LDV+R+ TFVAE+   DP E+ VPV+GGH+GVTILPLLSQV+     T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + ++ L G+  V+ECAYV        FFA  + LG+  +EEI S G L+ +E+  LE     L G I+ G  FV+
Sbjct:  133 KKAGVYDKNKLFGVTTLDVIRSETFVAELKDKDPGEIRVPVIGGHSGVTILPLLSQVQ-GVEFTAEEVAALTPRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVKALSGEEGVVECAYVEGNGEHARFFAQPILLGKNGVEEIQSYGELSAFEQEALESMLDTLRGDIKIGEEFVQ 311
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.905e-43
Identity = 93/180 (51.67%), Postives = 120/180 (66.67%), Query Frame = -1 
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD +RL GVT LDV+RA TFVAE  GL+  +V V V+GGH+GVTILPLLSQ++   S T  E+  +T RIQN GTEVVEAKAG GSATLSM  AA +F  + ++GL+G+A+VIECAYV        FFA  + LG+  +E +   G L+ +E+  ++     L   IQ GV FV+
Sbjct:  133 KKAGVYDKRRLFGVTTLDVIRAETFVAEAKGLNVDKVRVNVIGGHSGVTILPLLSQIE-GASFTADEVAAMTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANVIECAYVEGDGKHATFFAQPILLGKNGVETVLDYGKLSAFEQEAMDGMLATLKADIQLGVEFVK 311
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.100e-43
Identity = 95/180 (52.78%), Postives = 119/180 (66.11%), Query Frame = -1 
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  RL GVT LDV+R+ TFVAE   L+  +V VPV+GGH+GVTILPLLSQV+   S T  EI  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  IE++ + G ++ +E    +     L   IQ G+ FV+
Sbjct:  133 KKAGVYDKNRLFGVTTLDVIRSETFVAEAKDLNVADVKVPVIGGHSGVTILPLLSQVE-GVSFTDAEIAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHTEFFAQPVVLGKNGIEQVLAYGEVSAFEANARDAMLDTLKADIQLGIEFVK 311
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.100e-43
Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = -1 
Query:  307 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 840
            KK G YD ++L GVT LDV+R+  FV E+ GL+P  V+VPV+GGH+G TILPLLSQV+     T  EI  LT RIQN GTEVVEAKAG GSATLSM  AAA+FA + L+GL+G    IEC YV        FFA  VRLG+   EEI S G L+ +E+  +++    L G IQ G+ F
Sbjct:  133 KKAGCYDKRKLFGVTTLDVIRSEAFVGELRGLNPENVNVPVIGGHSGTTILPLLSQVE-GVEFTEQEIKDLTHRIQNAGTEVVEAKAGGGSATLSMGQAAARFALSLLKGLQGQ-DTIECTYVEGPGDNAKFFAQPVRLGKNGAEEILSYGKLSAFEQKCMDEMLDGLKGDIQTGIDF 308
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L G+T LD +R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+++V+EC+YV        FFA  + LG+  + E   +G L+ +E+  LE     L   I+ G  FV +
Sbjct:  133 KKAGVYDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNVVECSYVEGDGKYARFFAQPILLGKNGVAERKDIGKLSAFEQQALENMLDVLHKDIELGEKFVNQ 312
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L G+T LD +R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+++V+EC+YV        FFA  + LG+  + E   +G L+ +E+  LE     L   I+ G  FV +
Sbjct:  133 KKAGVYDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNVVECSYVEGDGKYARFFAQPILLGKNGVAERKDIGKLSAFEQQALENMLDVLHKDIELGEKFVNQ 312
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L G+T LD +R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+++V+EC+YV        FFA  + LG+  + E   +G L+ +E+  LE     L   I+ G  FV +
Sbjct:  133 KKAGVYDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNVVECSYVEGDGKYARFFAQPILLGKNGVAERKDIGKLSAFEQQALENMLDVLHKDIELGEKFVNQ 312
[Close]
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = -1 
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L G+T LD +R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+++V+EC+YV        FFA  + LG+  + E   +G L+ +E+  LE     L   I+ G  FV +
Sbjct:  133 KKAGVYDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNVVECSYVEGDGKYARFFAQPILLGKNGVAERKDIGKLSAFEQQALENMLDVLHKDIELGEKFVNQ 312
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_CITK82.990e-4352.49Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_VIBFM3.905e-4352.22Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]
MDH_VIBF13.905e-4352.22Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]
MDH_AERHH3.905e-4351.67Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SHEHH5.100e-4352.78Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_IDILO5.100e-4353.93Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_YERPY8.700e-4349.72Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS8.700e-4349.72Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP8.700e-4349.72Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN8.700e-4349.72Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
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