CX671975

Overview
NameCX671975
Unique NameCX671975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOL5 (UPF0061 protein ydiU OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNSAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y5402_METPB (UPF0061 protein Mpop_5402 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=Mpop_5402 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28
Identity = 69/135 (51.11%), Postives = 87/135 (64.44%), Query Frame = 3 
Query:  372 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            + +V+P+A VE P+LV  + ++A  L LDP   E P+     SG     GA P A  Y GHQFG +  QLGDGRAI LGE++     R ++QLKG+G TP+SR  DG A L   +RE+L SEAMH LGIPTTRAL
Sbjct:   19 FARVAPTA-VEAPRLVRLNRTLALDLGLDPDRLESPEGLDVLSGRRVAEGAEPLAAAYAGHQFGQFVPQLGDGRAILLGEVVGRDGRRRDIQLKGSGPTPFSRRGDGRAALGPVLREYLVSEAMHALGIPTTRAL 152
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2463_PECCP (UPF0061 protein PC1_2463 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_2463 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28
Identity = 74/135 (54.81%), Postives = 82/135 (60.74%), Query Frame = 3 
Query:  372 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            YT + P   +   +L+  SE +A  L L    F  P+    +SG   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEAMH LGIPTTRAL
Sbjct:   19 YTALQPKP-LHGARLLYHSEGLAAELGLSSDWFT-PEQDAVWSGERLLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQQLADGRSMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEAMHHLGIPTTRAL 151
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_SHISS (UPF0061 protein ydiU OS=Shigella sonnei (strain Ss046) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOUT (UPF0061 protein ydiU OS=Escherichia coli (strain UTI89 / UPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLI (UPF0061 protein ydiU OS=Escherichia coli (strain K12) GN=ydiU PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLC (UPF0061 protein ydiU OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOL6 (UPF0061 protein ydiU OS=Escherichia coli O6 GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOK1 (UPF0061 protein ydiU OS=Escherichia coli O1:K1 / APEC GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOHS (UPF0061 protein ydiU OS=Escherichia coli O9:H4 (strain HS) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
The following BLAST results are available for this feature:
BLAST of CX671975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
YDIU_ECOL51.069e-2850.70UPF0061 protein ydiU OS=Escherichia coli O6:K15:H3... [more]
Y5402_METPB1.069e-2851.11UPF0061 protein Mpop_5402 OS=Methylobacterium popu... [more]
Y2463_PECCP1.069e-2854.81UPF0061 protein PC1_2463 OS=Pectobacterium carotov... [more]
YDIU_SHISS1.396e-2850.70UPF0061 protein ydiU OS=Shigella sonnei (strain Ss... [more]
YDIU_ECOUT1.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli (strain U... [more]
YDIU_ECOLI1.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOLC1.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli (strain A... [more]
YDIU_ECOL61.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli O6 GN=ydi... [more]
YDIU_ECOK11.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli O1:K1 / A... [more]
YDIU_ECOHS1.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli O9:H4 (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671975 ID=CX671975; Name=CX671975; organism=Citrus sinensis; type=EST; length=781bp
CTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTC
CGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACAAAGTC
TCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGGCGGCG
GTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGCATGAT
TTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGAGATGA
GAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTGGGACC
ACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTATCCCT
CGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGT
AGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTG
AGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCT
GGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGG
ACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAA
CTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTT
AAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGT
ACTGCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTT
TAGGAATCCCAACAACTCGTGCACTTTGTCT
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