CX671975

Overview
NameCX671975
Unique NameCX671975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECODH (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / DH10B) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOBW (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / BW2952) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECO45 (UPF0061 protein ydiU OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECO27 (UPF0061 protein ydiU OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1748_RALSO (UPF0061 protein RSc1748 OS=Ralstonia solanacearum GN=RSc1748 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 74/135 (54.81%), Postives = 82/135 (60.74%), Query Frame = 3 
Query:  375 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            T++ P      P LV +S   A  L L     + P     F G    A + P A  Y GHQFG+WAGQLGDGRA+ L E L       E+QLKGAG TPYSR  DG AVLRSSIREFLCSEAM  LGIPTTRALC
Sbjct:   38 TRLPPVPMPAAPYLVGFSPEAAAPLGLSRAGLDTPAGLDVFVGNAIAAWSDPLATVYSGHQFGVWAGQLGDGRALLLAE-LQTADGPCEVQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMAGLGIPTTRALC 171
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1396_RALEJ (UPF0061 protein Reut_A1396 OS=Ralstonia eutropha (strain JMP134) GN=Reut_A1396 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 71/135 (52.59%), Postives = 89/135 (65.93%), Query Frame = 3 
Query:  372 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            +T++ P+  + +  LV+ + + A  L +  +    PDF   F G +    A P A  Y GHQFG+WAGQLGDGRAI L +     +  WE+QLKGAG TPYSR ADG AVLRSSIRE+LCSEAM  LG+PTTRAL
Sbjct:   39 FTRLRPTP-LPSAYLVSVAPNAAALLGMPVEAASEPDFIEAFVGNSVPDWADPLATVYSGHQFGVWAGQLGDGRAIRLAQA-QTDTGPWEIQLKGAGLTPYSRMADGRAVLRSSIREYLCSEAMAALGVPTTRAL 171
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1842_ERWCT (UPF0061 protein ECA1842 OS=Erwinia carotovora subsp. atroseptica GN=ECA1842 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 73/135 (54.07%), Postives = 83/135 (61.48%), Query Frame = 3 
Query:  372 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            YT + P+  +   +L+  SE +A  L L    F  P+    +SG   L G  P AQ Y GHQFG WAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS+IREFL SEAMH LGIPTTRAL
Sbjct:   19 YTALQPTP-LHGARLLYHSEGLASELGLSSDWFT-PEQDDVWSGTRLLPGMEPLAQVYSGHQFGSWAGQLGDGRGILLGEQQLADGRSMDWHLKGAGLTPYSRMGDGRAVLRSAIREFLASEAMHHLGIPTTRAL 151
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_SHIBS (UPF0061 protein ydiU OS=Shigella boydii serotype 4 (strain Sb227) GN=ydiU PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.381e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNIELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_SHIFL (UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQF +WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNAAG--VWGGETLLPGMSPLAQVYSGHQFVVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2131_KLEP7 (UPF0061 protein KPN78578_21310 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=KPN78578_21310 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28
Identity = 72/142 (50.70%), Postives = 86/142 (60.56%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  ++N +L+  +  +A  L +    F        + G   L G  P AQ Y GHQFG WAGQLGDGR I LGE       R++  LKGAG TPYSR  DG AVLRS+IRE L SEAMH LGIPTTRAL
Sbjct:   10 RDELPDFYTSLSPTP-LDNARLIWRNAPLAQQLGVPDALFAPESGAGVWGGEALLPGMSPLAQVYSGHQFGAWAGQLGDGRGILLGEQQLADGRRYDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHALGIPTTRAL 150
The following BLAST results are available for this feature:
BLAST of CX671975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
YDIU_ECODH1.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOBW1.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECO451.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli O45:K1 (s... [more]
YDIU_ECO271.396e-2850.70UPF0061 protein ydiU OS=Escherichia coli O127:H6 (... [more]
Y1748_RALSO1.396e-2854.81UPF0061 protein RSc1748 OS=Ralstonia solanacearum ... [more]
Y1396_RALEJ1.396e-2852.59UPF0061 protein Reut_A1396 OS=Ralstonia eutropha (... [more]
Y1842_ERWCT1.823e-2854.07UPF0061 protein ECA1842 OS=Erwinia carotovora subs... [more]
YDIU_SHIBS2.381e-2850.70UPF0061 protein ydiU OS=Shigella boydii serotype 4... [more]
YDIU_SHIFL3.110e-2850.70UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU ... [more]
Y2131_KLEP73.110e-2850.70UPF0061 protein KPN78578_21310 OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671975 ID=CX671975; Name=CX671975; organism=Citrus sinensis; type=EST; length=781bp
CTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTC
CGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACAAAGTC
TCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGGCGGCG
GTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGCATGAT
TTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGAGATGA
GAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTGGGACC
ACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTATCCCT
CGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGT
AGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTG
AGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCT
GGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGG
ACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAA
CTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTT
AAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGT
ACTGCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTT
TAGGAATCCCAACAACTCGTGCACTTTGTCT
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