CX671975

Overview
NameCX671975
Unique NameCX671975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671975_ssr30 microsatellite CX671975_ssr30:30..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12615 contig Csv1_Contig12615:49..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y558_PSEMY (UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_0558 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 81/170 (47.65%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +K L+ L +D+ F R   GD            A  T+V P   +E P+LV  S      L+LDP E +R +F   F+G      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SE +H LGIP++RALC
Sbjct:    1 MKKLDQLTFDNRFARL--GD------------AFSTEVLPEP-IEQPRLVVASSDAMALLDLDPAEAQREEFAELFAGHKLWGEAEPRAMVYSGHQFGGYTPRLGDGRGLLLGEVVNAAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALC 155          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y444_PSEFS (UPF0061 protein PFLU_0444 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_0444 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/170 (48.82%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +KAL++L +D+ F R   GD  +  +  E L A             P+LV  S +    L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LKGAG TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC
Sbjct:    1 MKALDELTFDNRFARL--GDAFSTHVLPEPLDA-------------PRLVVASPAAMALLDLDPSVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGGYTPQLGDGRGLLLGEVYNEAGEHWDLHLKGAGMTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALC 155          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y398_PSEPW (UPF0061 protein PputW619_0398 OS=Pseudomonas putida (strain W619) GN=PputW619_0398 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/170 (48.82%), Postives = 104/170 (61.18%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  S+S    L+LDP + + P F   FSG     GA P A  Y GHQFG +  +LGDGR + L E++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVIASKSAMALLDLDPAQADTPVFAELFSGHKLWEGADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVVNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALC 155          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y5028_PSESM (UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae pv. tomato GN=PSPTO_5028 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 84/170 (49.41%), Postives = 104/170 (61.18%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +KAL++L +D+ F R   GD            A  T V P   ++ P+LV  SES    L+L P++ E P F   FSG    A A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C
Sbjct:    1 MKALDELVFDNRFARL--GD------------AFSTHVLPEP-IDAPRLVVASESALALLDLAPEQSELPLFAEIFSGHKLWAEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAAC 155          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y369_PSEE4 (UPF0061 protein PSEEN0369 OS=Pseudomonas entomophila (strain L48) GN=PSEEN0369 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 82/170 (48.24%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +K+L+ L +D+ F R   GD            A  T+V P   + +P+LV  SE+    L+LDP + + P F   FSG      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC
Sbjct:    1 MKSLDQLVFDNRFARL--GD------------AFSTQVLPDP-IADPRLVVASEAAMALLDLDPAQADLPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLGEVVNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALC 155          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2935_VARPS (UPF0061 protein Vapar_2935 OS=Variovorax paradoxus (strain S110) GN=Vapar_2935 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.153e-33
Identity = 80/139 (57.55%), Postives = 96/139 (69.06%), Query Frame = 3
Query:  366 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            A  T++ P+   + P  V  SE+ A  L L P ++ + +  L   +G  P+AG +P+A  Y GHQFG+WAGQLGDGRAI LGE         E+QLKGAG+TPYSR ADG AVLRSSIREFLCSEAMH LGIPTTRALC
Sbjct:   27 AFLTELRPTPLPDPPYWVGHSEAAARLLGL-PADWRQSEGTLAALTGNLPVAGTLPFATVYSGHQFGVWAGQLGDGRAIMLGET----EGGLEVQLKGAGRTPYSRGADGRAVLRSSIREFLCSEAMHGLGIPTTRALC 160          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2581_POLSJ (UPF0061 protein Bpro_2581 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=Bpro_2581 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 82/164 (50.00%), Postives = 100/164 (60.98%), Query Frame = 3
Query:  288 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            L W +SF R  PG               YT++ P+  + +P  V  S+++A  L L+    E  +     +G    AG+ P A  Y GHQFG+WAGQLGDGRAI LG+ L   +   E+QLKGAG+TPYSR  DG AVLRSSIREFL SEAMH LGIPTTRALC
Sbjct:   19 LKWGNSFARLGPG--------------FYTELQPTP-LPSPYWVGRSQALARELGLEDHWLESAEALEVLTGNRSTAGSRPLASVYSGHQFGVWAGQLGDGRAILLGD-LQTPAGPQEIQLKGAGRTPYSRMGDGRAVLRSSIREFLASEAMHGLGIPTTRALC 166          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y485_PSE14 (UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_0485 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +KAL++L +D+ F R   GD  + S+  E              +E P+LV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE  N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C
Sbjct:    1 MKALDELIFDNRFARL--GDAFSTSVLSE-------------PIETPRLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEAYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAGC 155          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1192_THISH (UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=Tgr7_1192 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 80/166 (48.19%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  279 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            LEDL + +S+ R LP              A + +  P A    P  VA++E  A  + L P+E  R +F   F+G  PL G  P +  Y GHQFG++  QLGDGRA+ LGE+   +  RWELQLKG+G T +SR ADG AVLRS+IRE+L SEAMH LG+PTTRAL
Sbjct:    4 LEDLKFINSYAR-LP-------------EAFHDRPMP-APFPQPYRVAFNEKAAALIGLHPEEASRAEFVNAFTGQIPLTGMEPVSMIYAGHQFGVYVPQLGDGRALVLGEVQTPEGARWELQLKGSGPTRFSRGADGRAVLRSTIREYLASEAMHALGVPTTRAL 154          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y494_PSEU2 (UPF0061 protein Psyr_0494 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_0494 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +KAL++L +D+ F R   GD  + S+  E + A             PQLV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SE +H LGIP++RA C
Sbjct:    1 MKALDELIFDNRFARL--GDAFSTSVLPEPIDA-------------PQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGC 155          
The following BLAST results are available for this feature:
BLAST of CX671975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y558_PSEMY1.882e-3347.65UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina... [more]
Y444_PSEFS1.882e-3348.82UPF0061 protein PFLU_0444 OS=Pseudomonas fluoresce... [more]
Y398_PSEPW1.882e-3348.82UPF0061 protein PputW619_0398 OS=Pseudomonas putid... [more]
Y5028_PSESM2.458e-3349.41UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae... [more]
Y369_PSEE44.193e-3348.24UPF0061 protein PSEEN0369 OS=Pseudomonas entomophi... [more]
Y2935_VARPS7.153e-3357.55UPF0061 protein Vapar_2935 OS=Variovorax paradoxus... [more]
Y2581_POLSJ2.081e-3250.00UPF0061 protein Bpro_2581 OS=Polaromonas sp. (stra... [more]
Y485_PSE142.718e-3247.06UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae... [more]
Y1192_THISH2.718e-3248.19UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. ... [more]
Y494_PSEU23.550e-3247.06UPF0061 protein Psyr_0494 OS=Pseudomonas syringae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671975 ID=CX671975; Name=CX671975; organism=Citrus sinensis; type=EST; length=781bp
CTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTC
CGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACAAAGTC
TCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGGCGGCG
GTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGCATGAT
TTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGAGATGA
GAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTGGGACC
ACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTATCCCT
CGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGT
AGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTG
AGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCT
GGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGG
ACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAA
CTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTT
AAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGT
ACTGCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTT
TAGGAATCCCAACAACTCGTGCACTTTGTCT
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