CX671975

Overview
NameCX671975
Unique NameCX671975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671975_ssr30 microsatellite CX671975_ssr30:30..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12615 contig Csv1_Contig12615:49..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECO81 (UPF0061 protein ydiU OS=Escherichia coli O81 (strain ED1a) GN=ydiU PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECO5E (UPF0061 protein ydiU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECO57 (UPF0061 protein ydiU OS=Escherichia coli O157:H7 GN=ydiU PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y737_YERPP (UPF0061 protein YPDSF_0737 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_0737 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 74/149 (49.66%), Postives = 90/149 (60.40%), Query Frame = 3 
Query:  330 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEA+H LGIPT+RAL
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRAL 155
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2396_YERPB (UPF0061 protein YPTS_2396 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2396 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 74/149 (49.66%), Postives = 90/149 (60.40%), Query Frame = 3 
Query:  330 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEA+H LGIPT+RAL
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRAL 155
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2321_YERPS (UPF0061 protein YPTB2321 OS=Yersinia pseudotuberculosis GN=YPTB2321 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 74/149 (49.66%), Postives = 90/149 (60.40%), Query Frame = 3 
Query:  330 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEA+H LGIPT+RAL
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRAL 155
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1840_YERPY (UPF0061 protein YPK_1840 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1840 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 74/149 (49.66%), Postives = 90/149 (60.40%), Query Frame = 3 
Query:  330 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEA+H LGIPT+RAL
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRAL 155
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1734_YERP3 (UPF0061 protein YpsIP31758_1734 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=YpsIP31758_1734 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 74/149 (49.66%), Postives = 90/149 (60.40%), Query Frame = 3 
Query:  330 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEA+H LGIPT+RAL
Sbjct:    5 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRAL 151
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLU (UPF0061 protein ydiU OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.184e-29
Identity = 73/142 (51.41%), Postives = 91/142 (64.08%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +L+  +  +A++L + P    + D  ++  G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPGTYTALSPTP-LNNARLIWHNTELANTLSI-PSSLFKNDAGVW-GGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQRLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
[Close]
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: YDIU_SHIB3 (UPF0061 protein ydiU OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ydiU PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28
Identity = 73/142 (51.41%), Postives = 89/142 (62.68%), Query Frame = 3 
Query:  351 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            R+ L   YT +SP+  + N +LV  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL
Sbjct:   10 RDELPETYTALSPTP-LNNARLVWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRAL 148
The following BLAST results are available for this feature:
BLAST of CX671975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
YDIU_ECO813.674e-2951.41UPF0061 protein ydiU OS=Escherichia coli O81 (stra... [more]
YDIU_ECO5E3.674e-2951.41UPF0061 protein ydiU OS=Escherichia coli O157:H7 (... [more]
YDIU_ECO573.674e-2951.41UPF0061 protein ydiU OS=Escherichia coli O157:H7 G... [more]
Y737_YERPP6.266e-2949.66UPF0061 protein YPDSF_0737 OS=Yersinia pestis (str... [more]
Y2396_YERPB6.266e-2949.66UPF0061 protein YPTS_2396 OS=Yersinia pseudotuberc... [more]
Y2321_YERPS6.266e-2949.66UPF0061 protein YPTB2321 OS=Yersinia pseudotubercu... [more]
Y1840_YERPY6.266e-2949.66UPF0061 protein YPK_1840 OS=Yersinia pseudotubercu... [more]
Y1734_YERP36.266e-2949.66UPF0061 protein YpsIP31758_1734 OS=Yersinia pseudo... [more]
YDIU_ECOLU8.184e-2951.41UPF0061 protein ydiU OS=Escherichia coli O17:K52:H... [more]
YDIU_SHIB31.069e-2851.41UPF0061 protein ydiU OS=Shigella boydii serotype 1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671975 ID=CX671975; Name=CX671975; organism=Citrus sinensis; type=EST; length=781bp
CTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTC
CGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACAAAGTC
TCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGGCGGCG
GTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGCATGAT
TTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGAGATGA
GAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTGGGACC
ACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTATCCCT
CGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGT
AGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTG
AGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCT
GGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGG
ACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAA
CTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTT
AAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGT
ACTGCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTT
TAGGAATCCCAACAACTCGTGCACTTTGTCT
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