CX671974

Overview
NameCX671974
Unique NameCX671974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1334_CLOBA (UPF0061 protein CLH_1334 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=CLH_1334 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 58/199 (29.15%), Postives = 89/199 (44.72%), Query Frame = -3
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAI----MTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P IG+WN+A+F+ TL      D + A  + +   +K+ D Y       M  KLG+    + +K++I  LL  M   K DYTN F  L+                    L DI     + +  W   + + L S   S EE K LM   NP  + RN   + A+ AA +  D+  ++ LL +++ PYD     E Y+ +P
Sbjct:  297 PKIGVWNLARFAETLLPLLDEDLESAVEIAQNSISKYSDLYNKYWYTGMRAKLGIFNEKEEDKELIQSLLTMMKRFKADYTNTFSNLT-----------------LGNLSDIDMFASKEFKMWYEVWKERLKSQNQSSEESKMLMEKSNPTIIPRNNRVEEALVAAIKDSDYSVMQSLLDVLKNPYDYSSINEYYSIVP 478          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1226_CLOB1 (UPF0061 protein CLB_1226 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=CLB_1226 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 59/203 (29.06%), Postives = 95/203 (46.80%), Query Frame = -3
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQ----AIMTKKLGLPKYNKQI-----ISKLLNNMAVDKVDYTNFFRALS--NVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P+I  WN+A+F+ TL     I+  EA  + E   + F   Y+    + M  KLG+  +N+++     I  LL+ M     DYTN FRAL+  N+       ED +L              K  +  W   + + L     +    K LM S NP  + RN+  + A++AA + GD+  + +LL  + +PYD     + Y++LP
Sbjct:  297 PNIATWNLARFAETLLPLLHINPNEAIKIAENAVSDFTKLYKNNWLSGMRAKLGI--FNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNI-------EDTVL------------GGKVEFDKWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLP 478          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1195_CLOBH (UPF0061 protein CBO1195/CLC_1238 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=CBO1195 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 59/203 (29.06%), Postives = 95/203 (46.80%), Query Frame = -3
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQ----AIMTKKLGLPKYNKQI-----ISKLLNNMAVDKVDYTNFFRALS--NVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P+I  WN+A+F+ TL     I+  EA  + E   + F   Y+    + M  KLG+  +N+++     I  LL+ M     DYTN FRAL+  N+       ED +L              K  +  W   + + L     +    K LM S NP  + RN+  + A++AA + GD+  + +LL  + +PYD     + Y++LP
Sbjct:  297 PNIATWNLARFAETLLPLLHINPNEAIKIAENAVSDFTKLYKNNWLSGMRAKLGI--FNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNI-------EDTVL------------GGKVEFDKWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLP 478          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y3044_RHOPA (UPF0061 protein RPA3044 OS=Rhodopseudomonas palustris GN=RPA3044 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 53/199 (26.63%), Postives = 89/199 (44.72%), Query Frame = -3
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKE----ANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P I LWN+ + +  L      DD +    A   +  +  +F   Y A +  KLGL      ++Q+  + L  +A  + D+T  FR LS+   DPS      L  ++A+  D       A+  W   +   + +       R+A M  VNP Y+ RN+  ++ I AA +  DF     +L ++  P++E+    +YA  P
Sbjct:  291 PPIALWNLTRLAECLVRLLADDDDKGIEIAQTALGGFAEQFNAAYLAKLAAKLGLFTSQPDDQQLSQEFLTALAKGEADFTLAFRRLSDAAVDPSD-----LGEVRALFAD-----PAAFDEWAPRWRARIATEPQDATTRQAAMRRVNPAYIPRNHRIEAVIRAAVDRDDFAPFEEILTVLANPFEEKAEFARYAEPP 479          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y945_AGRT5 (UPF0061 protein Atu0945 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=Atu0945 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 57/201 (28.36%), Postives = 89/201 (44.28%), Query Frame = -3
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKE------ANYVMERYGTKFMDEYQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P I  WNIA+ +  L    L+D +       AN V+  +   F   +   M +KLGL    +    +I  LL+ M   + D+T  FR LS+     + P   + + +      + + R+ A               GISD ER A M S+NP  + RN+  +  I+AA E GDF     +L  +  P++E+P    Y + P
Sbjct:  288 PGIAQWNIARLAECLLP--LLDPEVEKAAELANAVLADFAAAFPQRWLTGMREKLGLTTEEEGDMDLIQSLLSLMQASEADFTLTFRRLSHAANGDAEPFRGMFIDIAGADAFLTRWRERAG------------REGISDSERSAAMLSINPAIIPRNHRIEELIEAAVEDGDFEPFHAMLTAIATPFEERPDNFVYMQPP 474          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y040_CLOPS (UPF0061 protein CPR_0040 OS=Clostridium perfringens (strain SM101 / Type A) GN=CPR_0040 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 56/198 (28.28%), Postives = 91/198 (45.96%), Query Frame = -3
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAI----MTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P++ LWN+A+FS  L      +  EA  + ++  + F   Y+      M  KLGL    + ++ +I  LL+ M   + D+TN F +L+  K      EDE +                 + +W   +   L       EE + LM + NP  + RN+L + A+  AE GDF  +  LL+ ++ PY     +EKY +LP
Sbjct:  297 PNMALWNLARFSEALLPLLNPNLDEAVNIAKKSISSFSKLYKKYWFNKMRAKLGLFTKKENDELLIEGLLSTMQKYEADFTNTFVSLTLNKF-----EDEKVFS------------SNEFKTWYALWKDRLKEENRPKEEVRNLMMNNNPYIIPRNHLVEEALKNAEKGDFTFMDNLLEALKNPYSYSKDLEKYTKLP 477          
The following BLAST results are available for this feature:
BLAST of CX671974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
Y1334_CLOBA5.148e-1129.15UPF0061 protein CLH_1334 OS=Clostridium botulinum ... [more]
Y1226_CLOB15.148e-1129.06UPF0061 protein CLB_1226 OS=Clostridium botulinum ... [more]
Y1195_CLOBH5.148e-1129.06UPF0061 protein CBO1195/CLC_1238 OS=Clostridium bo... [more]
Y3044_RHOPA6.723e-1126.63UPF0061 protein RPA3044 OS=Rhodopseudomonas palust... [more]
Y945_AGRT58.781e-1128.36UPF0061 protein Atu0945 OS=Agrobacterium tumefacie... [more]
Y040_CLOPS8.781e-1128.28UPF0061 protein CPR_0040 OS=Clostridium perfringen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671974 ID=CX671974; Name=CX671974; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAAAATAAAAAATTGTAATAAATAAAATGATTTC
GAAATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATT
ATTTCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTC
GACTATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACA
TAATGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCT
GGTCGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGG
TTGCTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCAC
CAAAATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTT
CTAAGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTC
ATCTGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGC
TGATCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTC
AGTGGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATT
GGAAAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATAT
TGTTTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGT
TTCTTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCATATCT
TTCCATGACATAATTTGCCTCTTTATCATCTATCAATTTAGCTGCTGCTA
GAGTTGTGGAAAACTGTGCAATGTTCCACAAGCCAATATCAGGCT
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